CF835651

Overview
NameCF835651
Unique NameCF835651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 345.125 bits (884), Expect = 2.194e-94
Identity = 167/241 (69.29%), Postives = 200/241 (82.99%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_PYRSA (Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina PE=2 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.866e-94
Identity = 165/242 (68.18%), Postives = 208/242 (85.95%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGA-YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESE--YSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            +GIIVICLDELLQKGYG+GS ISLFIATN+CESI+WK+FSPTTIN+GRG EFEGA++ALF L+ITK +KV AL+EAFYRQNLPN+TNLLATVLVF++VVYFQGF+V LP+    ++G  G  YPIKLFYTSNMPIILQ+ALVSNLYFISQ+LY++Y  N  +++LG+W+E E   SG   PVGG+AYY++   S A++ ++P HAL Y++F+L +CALFSKTWI+VSG+SA DV+KQL++QQ
Sbjct:  162 SGIIVICLDELLQKGYGIGSAISLFIATNVCESIVWKSFSPTTINTGRGTEFEGALVALFQLMITKTDKVRALQEAFYRQNLPNVTNLLATVLVFVLVVYFQGFQVELPITPAKSKGMAGQFYPIKLFYTSNMPIILQTALVSNLYFISQILYKRYPENIIIHILGRWEEPEMSVSGQMRPVGGIAYYISPLNSFAEIVSDPVHALLYIIFILASCALFSKTWIQVSGTSASDVSKQLRDQQ 403          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_HEMAM (Protein transport protein Sec61 subunit alpha OS=Hemitripterus americanus GN=sec61a PE=2 SV=3)

HSP 1 Score: 343.969 bits (881), Expect = 4.889e-94
Identity = 168/241 (69.71%), Postives = 198/241 (82.16%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALRE FYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREGFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAGIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 343.199 bits (879), Expect = 8.339e-94
Identity = 166/241 (68.88%), Postives = 200/241 (82.99%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            AG+IV+ LDELLQKGYGLGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGN  V+LLG W ++   G   + PVGGL +Y++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQ
Sbjct:  158 AGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLEDPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_HALRO (Protein transport protein Sec61 subunit alpha OS=Halocynthia roretzi PE=2 SV=1)

HSP 1 Score: 327.405 bits (838), Expect = 4.735e-89
Identity = 164/241 (68.05%), Postives = 194/241 (80.50%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            A +IV+ LDELLQKGYGLGSGISLFIATNICE+I+WK+FSP T+N+GRG EFEGAVIALFHLL T+ +KV ALREAFYR NLPN+ NL AT+LVF IV+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVS LY ISQ+L  ++ GNFF+ LLG W++ E  G   S PV  L YY++ P S   M  +P H L Y+ FML +CA FSKTWIEVSGS+A+DVAKQLKEQQ
Sbjct:  158 ASLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKSFSPATVNTGRGTEFEGAVIALFHLLATRSDKVRALREAFYRPNLPNLMNLSATILVFGIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSGLYVISQMLAIRFRGNFFIGLLGVWEDVEGGGPARSYPV-ALCYYLSPPESFFSMFLDPIHGLLYITFMLGSCAFFSKTWIEVSGSAAKDVAKQLKEQQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_NEUCR (Protein transport protein SEC61 subunit alpha OS=Neurospora crassa GN=sec-61 PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.008e-88
Identity = 159/238 (66.81%), Postives = 190/238 (79.83%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            AG+IVI LDELLQKGYGLGSGISLFIATNICESI+WKAFSPT+IN+GRG E+EGAVIALFHLL+T  NK  AL EAFYRQNLPNI NLLAT++VF  V+Y QGF+V +PV+S   RG +G+YPI+LFYTSNMPI+LQSAL SN++ ISQ+LY ++S N  V L G W+  E +     V GL YY++ P +  D   +P H   Y+ +MLTACA+FSKTWIEVSGSS RDVAKQLK+Q
Sbjct:  160 AGMIVILLDELLQKGYGLGSGISLFIATNICESIMWKAFSPTSINTGRGPEYEGAVIALFHLLMTWDNKQRALYEAFYRQNLPNIMNLLATLVVFAAVIYLQGFRVEIPVKSSRQRGARGSYPIRLFYTSNMPIMLQSALSSNVFLISQMLYSRFSENLLVRLFGVWEAKEGTAQLSAVSGLVYYMSPPLNFKDALLDPIHTAVYIAYMLTACAVFSKTWIEVSGSSPRDVAKQLKDQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_HANAN (Protein transport protein SEC61 subunit alpha OS=Hansenula anomala GN=SEC61 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 7.322e-82
Identity = 150/239 (62.76%), Postives = 180/239 (75.31%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FAGIIVI LDELLQKGYGLGSGISLF+ATNICE I WKAF+PTT+N+GRG EFEGAV+ALFHLL  +++K  AL EAFYRQNLPNI  LLAT +VF +VVY QGF+  +PVRS   RGQ G YPIKLFYTSN PI+LQSAL SN + ISQ+L++++  N  V L G W     S       GLAYY+  P SL +   +P   + Y+ F+L+ CALFSKTWIE+SG++ RDVAKQ K+Q
Sbjct:  159 FAGIIVILLDELLQKGYGLGSGISLFMATNICEQIFWKAFAPTTVNNGRGDEFEGAVVALFHLLSVRKDKRRALVEAFYRQNLPNIFQLLATFIVFFLVVYLQGFRYEIPVRSTRQRGQNGLYPIKLFYTSNTPIMLQSALTSNFFIISQMLFQRFPLNPVVRLFGVWDARPGSAQLFASNGLAYYIQPPLSLTEALLDPIKTVIYVSFVLSVCALFSKTWIEISGTAPRDVAKQFKDQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_DEBHA (Protein transport protein SEC61 subunit alpha OS=Debaryomyces hansenii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.057e-80
Identity = 141/239 (59.00%), Postives = 182/239 (76.15%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FAGI+VI LDELLQKGYGLGSGISLF ATN+CE + WKAF+PTT N G+G EFEGAV+ALFHLL ++++K  AL EAFYR +LPN+  L+ATV VFL+VVY QGF++ LP++S   RG  G YPI+LFYTSN+PI+LQSAL SN++ ISQ+L+ ++  N FV +LG W   + +     V GLAYY+  P S  +   +P   + Y++F+L +CA+FS TWIE+SG+S RDVAKQ KEQ
Sbjct:  159 FAGIVVILLDELLQKGYGLGSGISLFTATNVCEQVFWKAFAPTTSNIGKGTEFEGAVVALFHLLGSRKDKKRALLEAFYRSHLPNMFQLIATVFVFLLVVYLQGFRIELPIKSTRQRGPYGLYPIRLFYTSNIPIMLQSALSSNIFIISQMLFVRWPNNIFVKILGSWDTRQGAAQLYAVSGLAYYIQPPLSFTEALLDPIKTIIYIIFVLGSCAVFSTTWIEISGASPRDVAKQFKEQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_YARLI (Protein transport protein SEC61 subunit alpha OS=Yarrowia lipolytica GN=SEC61 PE=3 SV=2)

HSP 1 Score: 291.582 bits (745), Expect = 2.879e-78
Identity = 139/238 (58.40%), Postives = 177/238 (74.37%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            A ++VI LDELLQKGYGLGSGISLFIATNICE I WKAF+PTT+N GRG EFEGA++A  HLL T+++K  A+ EAF RQ+LPN++ L+ TV +F  V+Y QGF+V +PV+S   RG  G +PIKLFYTSN+PI+LQSAL SN++ ISQ+L++K+  N  V LLG W   E      PV G+AYY+  P +  +  A+P   + Y+ F+L  CA+FS TWIE+SGSS RDVAKQ KEQ
Sbjct:  160 AALVVILLDELLQKGYGLGSGISLFIATNICEQIFWKAFAPTTVNKGRGYEFEGAIVAFVHLLFTRKDKKRAIIEAFTRQDLPNMSQLVTTVAIFAAVIYLQGFRVDIPVKSSKQRGPYGVFPIKLFYTSNLPIMLQSALTSNIFIISQMLFKKFPTNVLVRLLGVWDGREGMQQLFPVSGIAYYMQPPFNAKEALADPVKTVIYIAFVLGVCAVFSATWIEISGSSPRDVAKQFKEQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_KLULA (Protein transport protein SEC61 subunit alpha OS=Kluyveromyces lactis GN=SEC61 PE=3 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.094e-77
Identity = 143/241 (59.34%), Postives = 180/241 (74.69%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKW--KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FA   V+ LDELL KGYGLGSGISLF ATNI E I WKAF+PTT+N GRG EFEGAVIALFHLL  +++K  AL EAFYR+NLPN+  + +T+ VFL V+Y QGF+  LP++S   RGQ G+YPIKLFYTSN PI+LQSAL SN++ ISQ+LY+++S N  V LLG W  +    +G  + + GL+YY+  P S+ D   +P   + Y+ F+L ACALFSKTWIE+SG+S RDVAKQ K+Q
Sbjct:  158 FASFTVLLLDELLSKGYGLGSGISLFTATNIAEQITWKAFAPTTVNVGRGQEFEGAVIALFHLLAIRKDKKRALVEAFYRENLPNMFQVFSTIGVFLSVLYLQGFRYELPIKSTRTRGQYGSYPIKLFYTSNTPIMLQSALTSNIFLISQILYQRFSTNPLVKLLGVWGTRAGAPAGQQVALSGLSYYIQPPFSVTDALLDPIKTVVYVGFVLGACALFSKTWIEISGTSPRDVAKQFKDQ 398          
The following BLAST results are available for this feature:
BLAST of CF835651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
S61A1_BOVIN2.194e-9469.29Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PYRSA2.866e-9468.18Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_HEMAM4.889e-9469.71Protein transport protein Sec61 subunit alpha OS=H... [more]
S61A1_CANFA8.339e-9468.88Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_HALRO4.735e-8968.05Protein transport protein Sec61 subunit alpha OS=H... [more]
SC61A_NEUCR4.008e-8866.81Protein transport protein SEC61 subunit alpha OS=N... [more]
SC61A_HANAN7.322e-8262.76Protein transport protein SEC61 subunit alpha OS=H... [more]
SC61A_DEBHA1.057e-8059.00Protein transport protein SEC61 subunit alpha OS=D... [more]
SC61A_YARLI2.879e-7858.40Protein transport protein SEC61 subunit alpha OS=Y... [more]
SC61A_KLULA1.094e-7759.34Protein transport protein SEC61 subunit alpha OS=K... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01K08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835651 ID=CF835651; Name=CF835651; organism=Citrus sinensis; type=EST; length=724bp
GCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGGGA
TATGGCTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATTTGTGA
AAGCATTATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCGGG
GAGCTGAATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACC
AAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCT
TCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTG
TCTACTTTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCC
CGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACAT
GCCTATCATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTC
AGTTGCTCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGG
AAGTGGAAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCT
AGCTTATTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATC
CTTTCCATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTT
TTCTCGAAAACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGC
CAAGCAGCTTAAGGAGCAACAAAT
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