CF835651

Overview
NameCF835651
Unique NameCF835651
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_CANGA (Protein transport protein SEC61 subunit alpha OS=Candida glabrata GN=SEC61 PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.430e-77
Identity = 143/240 (59.58%), Postives = 176/240 (73.33%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK-ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FA  IV+ LDELL KGYGLGSGISLF ATNI E+I WKAF+PTT+NSGRG EFEGAVIA FHLL  +++K  AL EAFYR+NLPN+  ++ATV VFL V+Y QGF+  LPV+S   RGQ   YPIKLFYTSN PI+LQSAL SN++ ISQ+L++KY  N  + L G W      +G  +P+ G++YY+    SL     +P   + Y  F+L  CALFSKTWIE+SG+SA+DVAKQ KEQ
Sbjct:  158 FASFIVLLLDELLTKGYGLGSGISLFTATNIAENIFWKAFAPTTVNSGRGKEFEGAVIAFFHLLAVRKDKKRALVEAFYRENLPNMFQVIATVFVFLFVLYLQGFRYELPVKSTKVRGQMAIYPIKLFYTSNTPIMLQSALSSNIFLISQILFQKYPSNPVIRLFGVWGIRPGTNGPQVPLSGISYYLQPIGSLKMALLDPIKTVIYTAFVLGTCALFSKTWIEISGTSAKDVAKQFKEQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_CANAL (Protein transport protein SEC61 subunit alpha OS=Candida albicans GN=SEC61 PE=3 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.092e-77
Identity = 138/239 (57.74%), Postives = 175/239 (73.22%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FA  IVI LDELLQKGYGLGSG+SLF ATN CE + WKAF+PTT  S +G EF+GAV+A+FHLL ++++K  AL E+FYR NLPN+  LLAT+LVF  VVY QGF++ LP++S   RG  G+YPI+LFYTSN+PI+L+SAL SN++ ISQLL+ ++  N FV LLG W     S      GGLAYY+  P +  D   +P     Y+ F+L +CA+FS TWIE+SG+S RDVAKQ KEQ
Sbjct:  159 FASTIVILLDELLQKGYGLGSGVSLFTATNTCEQVFWKAFAPTTSTSAKGTEFDGAVVAMFHLLGSRKDKKRALIESFYRPNLPNMFQLLATLLVFFAVVYLQGFRIELPMKSTRQRGPYGSYPIRLFYTSNIPIMLESALASNIFIISQLLFMRWPNNLFVKLLGTWDARAGSSQLYANGGLAYYIQPPFNFTDALLDPIKTTIYIAFVLGSCAVFSTTWIEISGTSPRDVAKQFKEQ 397          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_ASHGO (Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii GN=SEC61 PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.210e-76
Identity = 143/242 (59.09%), Postives = 180/242 (74.38%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKW---KESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FA  IV+ LDELL KGYGLGSGISLF ATNI E I WKAF+PTT+N+GRG EFEGAV+ALFHLL  +++K  AL EAFYR  LPN+  +L+TV VFL V+Y QGF+  LPVRS   RGQ G+YPIKLFYTSN PI+LQSAL SN++  SQLLY+K+  N  V +LG W    ++ YS ++  + GL+YY+  P S  +   +P   + Y+ F+L ACA+FS+TWI+VSG+S RDV+KQ KEQ
Sbjct:  158 FASFIVLLLDELLIKGYGLGSGISLFTATNIAEQIFWKAFAPTTVNNGRGTEFEGAVVALFHLLSVRKDKKRALVEAFYRDYLPNMFQVLSTVFVFLFVLYLQGFRYELPVRSTRTRGQVGSYPIKLFYTSNTPIMLQSALTSNIFLTSQLLYQKFPNNPIVKMLGVWGTRSDAPYSPNA-AISGLSYYIQPPFSFTEALLDPIKTVVYVTFVLGACAMFSRTWIDVSGTSPRDVSKQFKEQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_YEAST (Protein transport protein SEC61 OS=Saccharomyces cerevisiae GN=SEC61 PE=1 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.063e-76
Identity = 140/240 (58.33%), Postives = 177/240 (73.75%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWK-ESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQ 719
            FA +IV+ LDELL KGYGLGSGISLF ATNI E I W+AF+PTT+NSGRG EFEGAVIA FHLL  +++K  AL EAFYR NLPN+  +L TV +FL V+Y QGF+  LP+RS   RGQ G YPIKLFYTSN PI+LQSAL SN++ ISQ+L++KY  N  + L+G W       G  + + GLAYY+    SL++   +P   + Y+ F+L +CA+FSKTWIE+SG+S RD+AKQ K+Q
Sbjct:  159 FASLIVMLLDELLSKGYGLGSGISLFTATNIAEQIFWRAFAPTTVNSGRGKEFEGAVIAFFHLLAVRKDKKRALVEAFYRTNLPNMFQVLMTVAIFLFVLYLQGFRYELPIRSTKVRGQIGIYPIKLFYTSNTPIMLQSALTSNIFLISQILFQKYPTNPLIRLIGVWGIRPGTQGPQMALSGLAYYIQPLMSLSEALLDPIKTIVYITFVLGSCAVFSKTWIEISGTSPRDIAKQFKDQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SC61A_SCHPO (Protein transport protein sec61 subunit alpha OS=Schizosaccharomyces pombe GN=sec61 PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 7.595e-71
Identity = 135/246 (54.88%), Postives = 172/246 (69.92%), Query Frame = 3
Query:    6 AGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL-------PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            A +IV+ LDELLQKGYGLGSGISLFIAT  CE+I WKAFSPTT +   G +FEGAVI   +++ T  NK  AL +AF+R  L       PN+ N  AT+LVF +V+Y Q F+V +P+RS+  RG +  +P+KL YTSN PI+LQSAL SNL+F S+LL+ ++S NF V  LG W+++  S       GL+YY++ PAS  D   +P H L Y+ F + ACALFSK WIEVSG+S RDVAKQLK QQ
Sbjct:  160 ASLIVLLLDELLQKGYGLGSGISLFIATINCENIFWKAFSPTTYHIANGVQFEGAVINFVYVMFTWDNKAAALYQAFFRSGLTSSQIQLPNLWNFFATLLVFGVVIYLQDFRVEIPIRSQKFRGYRSTFPVKLLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNFLVRFLGVWEQTATS-------GLSYYLSPPASFQDALIDPIHTLVYVFFTMFACALFSKLWIEVSGASPRDVAKQLKSQQ 398          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SECY_PYRAB (Preprotein translocase subunit secY OS=Pyrococcus abyssi GN=secY PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.980e-30
Identity = 87/242 (35.95%), Postives = 132/242 (54.55%), Query Frame = 3
Query:    3 FAGIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTT----INSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNL-PNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 713
            F GII+I LDEL+ K +G+GSGISLFIA  + + I+ ++ +P T    I+   G       I  F   I K    G L+ A YR    P++  ++AT++VFL+VVYF+  +V +P+  +     +G YPI+  Y SN+PIIL  AL +N+   +++L R         L   W  +       PVGG   YV  P S+  +  NP  AL YL+  + +  +F   W+E++G  AR +A+QL+
Sbjct:  156 FGGIILIVLDELVSK-WGIGSGISLFIAAGVSQRILTRSLNPLTDPNIIDPLTGKPAIVGAIPYFIQHILK----GDLKGALYRGGTAPDMMAVIATIIVFLVVVYFESMRVEIPLGYRGVT-IRGRYPIRFLYVSNIPIILTFALYANIQLWARVLDR---------LGHPWLGTFDPTTGNPVGGFVLYVIPPRSIFTVIDNPVRALVYLILTVISSLIFGFLWVELTGLDARTIARQLQ 382          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SECY_METVA (Preprotein translocase subunit secY OS=Methanococcus vannielii GN=secY PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.472e-29
Identity = 80/233 (34.33%), Postives = 125/233 (53.65%), Query Frame = 3
Query:   12 IIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQL 710
            I+VI LDE++ + YG+GSGI LFIA  + ++I   AF             EG +   F  +      VG+L  AF       I  +L+T+ VFL+VVY +  +V +P+     +G  G YPIK  Y SN+P+IL +AL +N+               F++ +G     +YS +   V G+AYY + P  ++++ ++P HA+FY + M+  C LF   W+E SG  A+ +AK+L
Sbjct:  151 ILVIYLDEIVSR-YGIGSGIGLFIAAGVAQTIFVGAFGA-----------EGYLWKFFSAM-----SVGSLGIAF-----EYILPILSTLFVFLVVVYVESIRVEIPLAHGRVKGAVGKYPIKFIYVSNLPVILAAALFANIQL----------WGMFLDRMGYPILGQYS-NGTAVSGIAYYFSTPYGISNIISDPLHAIFYTLMMVIFCILFGLFWVETSGLDAKSMAKKL 350          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SECY_METTH (Preprotein translocase subunit secY OS=Methanobacterium thermoautotrophicum GN=secY PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.506e-29
Identity = 82/238 (34.45%), Postives = 126/238 (52.94%), Query Frame = 3
Query:    9 GIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVR----SKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQL 710
            GI++I LDE++ K +G GSG+ LFIA  + + II  AF+P +  +  G    G +    +LL T Q+        F    LP    +LA + VFL+VVY +  +V +P+      + +RG  G YP++  Y SNMP+IL SAL+ N+  ++ +  +         +LG     +       V GLAY +TAP S+  +  +PF  +FY V  +  C LF+  W+E+S    R VA+QL
Sbjct:  155 GILIIFLDEVVSK-WGFGSGVGLFIAAGVSQEIIVGAFNPLSAPTQPGVP-AGRITGFLYLLFTGQSP------DFQYYVLP----VLALIAVFLVVVYAESMRVEIPISMGGGKRLSRGAVGKYPLRFIYASNMPVILTSALLLNVQLLANVFQK-----LGYPILGTVSNGQ------AVDGLAYLLTAPRSIDALILDPFRVVFYAVVFIGLCVLFAWLWVEISNIGPRHVARQL 369          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: SECY_PYRHO (Preprotein translocase subunit secY OS=Pyrococcus horikoshii GN=secY PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.392e-29
Identity = 85/242 (35.12%), Postives = 136/242 (56.20%), Query Frame = 3
Query:    9 GIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFSPTTINS------GRGAEFEGAVIALFHLLITKQNKVGALREAFYRQ-NLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLK 713
            GII+I LDEL+ K +G+GSGISLFIA  + + I+ ++ +P T  +      G+ A        + H+L       G L+ A YR  + P++  + AT++VFL+VVYF+  +V +P+  +     +G YPIK  Y SN+PIIL  AL +N+   +++L R     F    LG++     +G+  P+GG   YV  P ++  +  NP  A+ YL+  +    LF   W+E++G  AR +A+QL+
Sbjct:  158 GIILIVLDELVSK-WGIGSGISLFIAAGVSQRILTRSLNPLTDPNIIDPLTGKPAIVGAIPYFIQHILD------GDLKGALYRGGSAPDMIAVTATIIVFLVVVYFESMRVEIPLGYRGVT-IRGRYPIKFLYVSNIPIILTFALYANIQLWARVLDR-----FGHPWLGRF--DPVTGN--PIGGFVLYVIPPRNIFTVIDNPVRAIIYLILTIIFSLLFGFLWVELTGLDARTIARQLQ 382          
BLAST of CF835651 vs. ExPASy Swiss-Prot
Match: YGMH_SCHPO (Uncharacterized protein C19G7.17 OS=Schizosaccharomyces pombe GN=SPBC19G7.17 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 69/242 (28.51%), Postives = 125/242 (51.65%), Query Frame = 3
Query:    9 GIIVICLDELLQKGYGLGSGISLFIATNICESIIWKAFS--PTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESE-YSGHSIP-VGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQ 722
            GI+ I L E+++KG+GLGSG  L + ++I  +I+W   S     +N    ++++GA++     L + +NK  +LR   +R    +    L  + VF   +Y    ++ +P+RS   RG +  +P+KL YTS +P+I   +++S+L   +  LY     +    LL ++   + ++ H +  VGGL Y++  P  L++   +P H + Y + ++     FS  W+  +    RDV    KE Q
Sbjct:  161 GIVCIYLCEIIEKGHGLGSGPVLLLGSHILGNIMWDVLSLHRYPVNESGDSQYQGALVGFAFNLFSFKNKFSSLRSILFRSEGLSFVQFLVCIAVFATFMYTLNIRIDVPIRSSRVRGVRQNFPLKLLYTSVIPLIYFYSILSHLLVFAYALYSLCPNSLITRLLVQYSPIDTFAEHKLQLVGGLVYFLYPPLGLSEALLHPVHTVIYTITLICITIYFSLLWMNATAGGPRDVLLFFKENQ 402          
The following BLAST results are available for this feature:
BLAST of CF835651 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_CANGA5.430e-7759.58Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_CANAL7.092e-7757.74Protein transport protein SEC61 subunit alpha OS=C... [more]
SC61A_ASHGO1.210e-7659.09Protein transport protein SEC61 subunit alpha OS=A... [more]
SC61A_YEAST2.063e-7658.33Protein transport protein SEC61 OS=Saccharomyces c... [more]
SC61A_SCHPO7.595e-7154.88Protein transport protein sec61 subunit alpha OS=S... [more]
SECY_PYRAB4.980e-3035.95Preprotein translocase subunit secY OS=Pyrococcus ... [more]
SECY_METVA2.472e-2934.33Preprotein translocase subunit secY OS=Methanococc... [more]
SECY_METTH5.506e-2934.45Preprotein translocase subunit secY OS=Methanobact... [more]
SECY_PYRHO9.392e-2935.12Preprotein translocase subunit secY OS=Pyrococcus ... [more]
YGMH_SCHPO1.602e-2828.51Uncharacterized protein C19G7.17 OS=Schizosaccharo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01K08_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835651 ID=CF835651; Name=CF835651; organism=Citrus sinensis; type=EST; length=724bp
GCTTTGCTGGAATCATTGTGATATGCCTGGATGAACTTCTGCAGAAGGGA
TATGGCTTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATTTGTGA
AAGCATTATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCGGG
GAGCTGAATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACC
AAGCAAAACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCT
TCCCAATATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTG
TCTACTTTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCC
CGTGGGCAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACAT
GCCTATCATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTC
AGTTGCTCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGG
AAGTGGAAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCT
AGCTTATTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATC
CTTTCCATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTT
TTCTCGAAAACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGC
CAAGCAGCTTAAGGAGCAACAAAT
back to top