CF835677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38 Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = -1 Query: 199 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 540 K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GKG+ Sbjct: 13 KAVSRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSJ (Probable histone H2A.3 OS=Oryza sativa subsp. japonica GN=Os08g0427700 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38 Identity = 83/111 (74.77%), Postives = 87/111 (78.38%), Query Frame = -1 Query: 214 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 546 A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH LLPKK G Sbjct: 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_ORYSI (Probable histone H2A.3 OS=Oryza sativa subsp. indica GN=OsI_028288 PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.197e-38 Identity = 83/111 (74.77%), Postives = 87/111 (78.38%), Query Frame = -1 Query: 214 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMG 546 A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG+VTIANGGV+PNIH LLPKK G Sbjct: 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLPKKAG 123
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = -1 Query: 199 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 540 K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GKG+ Sbjct: 13 KAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKTKGGKGE 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A7_WHEAT (Protein H2A.7 OS=Triticum aestivum GN=H2A-4 PE=2 SV=3) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 83/114 (72.81%), Postives = 88/114 (77.19%), Query Frame = -1 Query: 205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546 A K++SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEELS+LLG VTIA+GGV+PNIH LLPKK G K Sbjct: 13 AKKAISRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGMVTIASGGVMPNIHNLLLPKKAGGSK 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSJ (Probable histone H2A.7 OS=Oryza sativa subsp. japonica GN=Os12g0438000 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 83/114 (72.81%), Postives = 87/114 (76.32%), Query Frame = -1 Query: 205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546 A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ LLPKK G K Sbjct: 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A7_ORYSI (Probable histone H2A.7 OS=Oryza sativa subsp. indica GN=OsI_036922 PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 83/114 (72.81%), Postives = 87/114 (76.32%), Query Frame = -1 Query: 205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546 A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ LLPKK G K Sbjct: 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 82/114 (71.93%), Postives = 88/114 (77.19%), Query Frame = -1 Query: 199 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGD 540 K+VSRS KAGLQFPVGRIAR+LK GKYAER+GAGAP AGNAARDNKKNRIVPRHIQLA+RNDEEL KLLG VTIA+GGVLPNIH LLPKK GKG+ Sbjct: 13 KAVSRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKSKGGKGE 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSJ (Probable histone H2A.1 OS=Oryza sativa subsp. japonica GN=Os07g0545300 PE=2 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 83/114 (72.81%), Postives = 87/114 (76.32%), Query Frame = -1 Query: 205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546 A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ LLPKK G K Sbjct: 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A1_ORYSI (Probable histone H2A.1 OS=Oryza sativa subsp. indica GN=OsI_26380 PE=3 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 4.175e-38 Identity = 83/114 (72.81%), Postives = 87/114 (76.32%), Query Frame = -1 Query: 205 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 546 A K+ SRS KAGLQFPVGRIARFLKAGKYAERVGAGAP AGNAARDNKK RIVPRHIQLAVRNDEEL+KLLG TIA+GGV+PNIHQ LLPKK G K Sbjct: 13 AKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAGSSK 126 The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bpback to top |