CF835677
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 70/111 (63.06%), Postives = 81/111 (72.97%), Query Frame = -1 Query: 211 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 543 +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 72/112 (64.29%), Postives = 79/112 (70.54%), Query Frame = -1 Query: 205 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 540 KS +RS +AGLQFPVGRI R L+ G YAERVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL VTIA GGVLPNI LLPKK K K Sbjct: 13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = -1 Query: 205 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 543 +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 74/123 (60.16%), Postives = 88/123 (71.54%), Query Frame = -1 Query: 178 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 546 +SK VSRS +AGLQFPVGRI+RFLK G+Y+ERVG GAP AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+ LLP K K + G ASQ+ Sbjct: 16 SSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = -1 Query: 211 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 543 +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP AGNAARDNKK RI+PRH+QLAVRNDEEL+KLL VTIA GGVLPNI LLPKK K Sbjct: 13 AKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 70/111 (63.06%), Postives = 81/111 (72.97%), Query Frame = -1 Query: 211 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 543 +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = -1 Query: 205 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 543 +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI LLPKK K Sbjct: 13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 71/107 (66.36%), Postives = 80/107 (74.77%), Query Frame = -1 Query: 220 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 540 KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ LLPKK Sbjct: 23 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 73/123 (59.35%), Postives = 84/123 (68.29%), Query Frame = -1 Query: 178 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 546 A S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH LLPKK K ASQE Sbjct: 12 AKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3) HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32 Identity = 71/108 (65.74%), Postives = 79/108 (73.15%), Query Frame = -1 Query: 220 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 543 +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP AGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI LLPKK Sbjct: 13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120 The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 239
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Sequences
The
following sequences are available for this feature:
EST sequence >CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bpback to top |