CF835677

Overview
NameCF835677
Unique NameCF835677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_STRPU (Histone H2A, embryonic OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 70/111 (63.06%), Postives = 81/111 (72.97%), Query Frame = -1
Query:  211 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 543
            +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_PLADU (Histone H2A OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 72/112 (64.29%), Postives = 79/112 (70.54%), Query Frame = -1
Query:  205 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 540
            KS +RS +AGLQFPVGRI R L+ G YAERVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLL  VTIA GGVLPNI   LLPKK  K K
Sbjct:   13 KSKTRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTTKAK 124          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A_CAIMO (Histone H2A OS=Cairina moschata PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = -1
Query:  205 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 543
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 74/123 (60.16%), Postives = 88/123 (71.54%), Query Frame = -1
Query:  178 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 546
            +SK VSRS +AGLQFPVGRI+RFLK G+Y+ERVG GAP                 AGNAA+DNKK RIVPRHI LA+RNDEEL+KL+ + TIA+GGVLPNI+  LLP K  K +   G ASQ+
Sbjct:   16 SSKQVSRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKSKKTESR-GQASQD 137          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 71/111 (63.96%), Postives = 80/111 (72.07%), Query Frame = -1
Query:  211 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 543
            +K+ SRS +AGLQFPVGR+ RFL+ G YA+RVGAGAP                 AGNAARDNKK RI+PRH+QLAVRNDEEL+KLL  VTIA GGVLPNI   LLPKK  K
Sbjct:   13 AKAKSRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKTSK 123          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2AE_PSAMI (Histone H2A, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 70/111 (63.06%), Postives = 81/111 (72.97%), Query Frame = -1
Query:  211 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGK 543
            +K+ +RS +AGLQFPVGR+ RFL+ G YA+RVG GAP                 AGNAARDNKK+RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK  K
Sbjct:   12 TKAKTRSSRAGLQFPVGRVHRFLRKGNYAKRVGGGAPVYMAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTAK 122          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A4_CHICK (Histone H2A-IV OS=Gallus gallus PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 71/113 (62.83%), Postives = 80/113 (70.80%), Query Frame = -1
Query:  205 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGK 543
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKK RI+PRH+QLA+RNDEEL+KLLG VTIA GGVLPNI   LLPKK    K
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTDSHK 125          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 71/107 (66.36%), Postives = 80/107 (74.77%), Query Frame = -1
Query:  220 KSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 540
            KSV+RS +AGLQFPVGRI R+LK G+YA+RVG GAP                 AGNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+  LLPKK
Sbjct:   23 KSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK 129          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2_ASHGO (Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 73/123 (59.35%), Postives = 84/123 (68.29%), Query Frame = -1
Query:  178 ASKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 546
            A  S SRS KAGL FPVGR+ R L+ G YA+R+G+GAP                 AGNAARDNKK RI+PRH+QLA+RND+EL+KLLG+VTIA GGVLPNIH  LLPKK  K       ASQE
Sbjct:   12 AKASQSRSAKAGLTFPVGRVHRLLRKGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHANLLPKKSAKAT----KASQE 130          
BLAST of CF835677 vs. ExPASy Swiss-Prot
Match: H2A2B_MOUSE (Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 71/108 (65.74%), Postives = 79/108 (73.15%), Query Frame = -1
Query:  220 SKSVSRSHKAGLQFPVGRIARFLKAGKYAERVGAGAPXXXXXXXXXXXXXXXXXAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK 543
            +K+ SRS +AGLQFPVGR+ R L+ G YAERVGAGAP                 AGNAARDNKK RI+PRH+QLAVRNDEEL+KLLG VTIA GGVLPNI   LLPKK
Sbjct:   13 AKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120          
The following BLAST results are available for this feature:
BLAST of CF835677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
H2A_STRPU7.627e-3263.06Histone H2A, embryonic OS=Strongylocentrotus purpu... [more]
H2A_PLADU7.627e-3264.29Histone H2A OS=Platynereis dumerilii PE=3 SV=2[more]
H2A_CAIMO7.627e-3262.83Histone H2A OS=Cairina moschata PE=3 SV=2[more]
H2AX_TETTH7.627e-3260.16Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AL_STRPU7.627e-3263.96Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2AE_PSAMI7.627e-3263.06Histone H2A, embryonic OS=Psammechinus miliaris PE... [more]
H2A4_CHICK7.627e-3262.83Histone H2A-IV OS=Gallus gallus PE=1 SV=2[more]
H2A3_MEDTR7.627e-3266.36Probable histone H2A.3 OS=Medicago truncatula PE=3... [more]
H2A2_ASHGO7.627e-3259.35Histone H2A.2 OS=Ashbya gossypii GN=HTA2 PE=3 SV=3[more]
H2A2B_MOUSE7.627e-3265.74Histone H2A type 2-B OS=Mus musculus GN=Hist2h2ab ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01L01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835677 ID=CF835677; Name=CF835677; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTCTTTTAAATAACATGTGGAAAGCAATGGAATAATCTCAT
CACTTTACACATAGTTAAAGATTAGCAAATGCAATCTCTGTTACCATAAG
AAAAAAACTCATAACCATTTTTCTTTTTGTCCTTTTTTACAGATACTAGT
AAAATTCTGACAGAGCAGAGTCTAGAACTCTTGAGAAGCAGAACCAATGT
CACCCTTTCCTTTCCCCATCTTCTTGGGAAGCAGCGTCTGGTGAATGTTG
GGTAAAACACCTCCATTGGCAATGGTAACCGAGCCCAGCAGCTTGCTCAA
TTCCTCATCATTTCGAACTGCAAGCTGAATATGCCTTGGCACTATACGGT
TCTTCTTGTTGTCCCTTGCTGCATTGCCAGCAAGCTCCAGAACCTCAGCA
GCGAGGTACTCAAGCACGGCAGAGAGGTAAACAGGAGCTCCGGCGCCGAC
TCGCTCAGCGTACTTTCCGGCCTTCAAAAACCTAGCGATCCTGCCCACCG
GGAACTGAAGGCCCGCCTTATGCGACCGCGAGACCGATTTCGAAGCCTTC
GGCTTACCCCTGCCGCCCTTCGTTGACCCTCCAGTTGAACTCATTCTTAT
TACAGAAAAACCCTAACCCTAGATTTCGGTTTGGTTTGAAGCGATTGAAA
G
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