CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURXL (60 kDa chaperonin 2 OS=Burkholderia xenovorans (strain LB400) GN=groL2 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 70/150 (46.67%), Postives = 91/150 (60.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RV+DAL+AT+AA            LLR  S + ++  T  N ++  G  IV RAL  PL++IA NAG   SVV  KVLS   + YGYNAATG Y DL+  G++DPTKV R  L++A+S+A   L +D  V E  + E A+PA  P
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSAISSL--TGANADQDAGIRIVLRALEAPLRVIAANAGDEPSVVVAKVLSGKGN-YGYNAATGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKEEKAVPAPAP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SYNP6 (60 kDa chaperonin 1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=groL1 PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKV--LSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            K++KLR+EDA+NATKAA           TL  L+ +++       + EE  GA IV RAL  PLK IA+NAG+NG+V+SE+V  L  D    GY+A+   + ++  AGI+DP KV R  L++A+S+A   L ++C+VV+  EP+   PAG
Sbjct:  388 KDRKLRLEDAINATKAAVEEGIVPGGGTTLAHLAPQLEEWATANLSGEELTGAQIVARALTAPLKRIAENAGLNGAVISERVKELPFDE---GYDASNNQFVNMFTAGIVDPAKVTRSALQNAASIAAMVLTTECIVVDKPEPKEKAPAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_AZOSB (60 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) GN=groL1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.165e-25
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA--MPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + +  +K   DN ++  G  IV RA+  PL+ I  NAG   SVV  KV+    + +GYNAATG Y D++  G++DPTKV R  L++A+SVA   L +DC+V E+ E +PA  MP    M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARASLAGLKG--DNHDQDAGIKIVLRAMEQPLREIVANAGDEASVVVNKVVEGSGN-FGYNAATGEYGDMVEMGVLDPTKVTRTALQNAASVASLMLTTDCMVGELAEDKPAGGMPGMGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHOS5 (60 kDa chaperonin OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ KV  SD+  +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  EP+ A PAG
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALIQAGKVLDGL--TGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESDDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSA-PAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHOPA (60 kDa chaperonin OS=Rhodopseudomonas palustris GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 65/148 (43.92%), Postives = 93/148 (62.84%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE+K RV+DALNAT+AA            L++    +D +  T +N ++  G  IV+RAL  PL+ IA+NAGV+GSVV+ KV  SD+  +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  EP+ A PAG
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALIQAGKVLDGL--TGENPDQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESDDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPEPKSA-PAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PORG3 (60 kDa chaperonin OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 64/147 (43.54%), Postives = 92/147 (62.59%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK RVEDAL+AT+AA             +R  + ++ +K   +N++E  G +IVKRA+  PL+ I  NAG  G+VV +KV    +  +GYNA T  +E+L + G+IDP KV R  LE+A+S+A  FL ++CV+ + KE  PA PA
Sbjct:  390 KEKKDRVEDALSATRAAIEEGTVPGGGTAYIRAIAALEGLKG--ENEDETTGIEIVKRAIEEPLRQIVANAGKEGAVVVQKVKEGKDD-FGYNARTDVFENLYSTGVIDPAKVTRVALENAASIAGMFLTTECVIADKKEDNPAAPA 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LACBA (60 kDa chaperonin OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=groL PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 71/152 (46.71%), Postives = 91/152 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNP 452
            KE+K R+EDALNAT+AA            L+ +   V  ++   D   EK G +IV RAL  P++ IA+NAGV GSVV E  L  +    GYNAA   YED++AAGI DPTKV R  L++A+SV+   L ++ VV E  E  P PA PA NP
Sbjct:  388 KERKYRIEDALNATRAAVEEGFVAGGGTALINVIGDVAKLEAEGD---EKTGINIVLRALEEPVRQIAQNAGVEGSVVVEH-LKGEKPGVGYNAADNKYEDMVAAGITDPTKVTRSALQNAASVSALLLTTEAVVAEKPEDNPAPAAPAANP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CRIGR (60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 67/148 (45.27%), Postives = 94/148 (63.51%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPA 443
            EKK RV DALNAT+AA          C LLR    +D++K +  N+++K+G +I+KRAL  P   IAKNAGV GS++ EK+L S + + GY+A  G++ +++  GIIDPTKVVR  L  A+ VA     ++ VV EI  +E +P M A
Sbjct:  416 EKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLKPS--NEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVEKILQSSS-EIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEAVVTEIPKEEKDPGMGA 560          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH604_BRASB (60 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL4 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 60/154 (38.96%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 455
            KE+K RV+DA++AT+AA            LLR S ++  ++    N+++K G +IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ TG+Y ++++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMP G  M
Sbjct:  390 KERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKGLRTK--NEDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYAYGFDSQTGDYVNMVSKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKNAGGPAMPPGGGM 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SPHAL (60 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=groL1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.133e-25
Identity = 64/149 (42.95%), Postives = 96/149 (64.43%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 449
            KE+K RV+DAL+AT+AA            LL  +  ++ +K    ND++  G DI+++A+  PL+ IA NAG +G+VV+  +L   + + G+NAAT  YE+L AAG+IDPTKVVR  L+ A+SVA   + ++  V E+ E +PAMP G+
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGA--NDDQTRGIDIIRKAIETPLRQIAANAGHDGAVVAGNLLRVGDVEQGFNAATDVYENLKAAGVIDPTKVVRTALQDAASVAGLLITTEAAVSELPEDKPAMPMGS 536          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BURXL3.165e-2546.6760 kDa chaperonin 2 OS=Burkholderia xenovorans (st... [more]
CH601_SYNP63.165e-2543.3360 kDa chaperonin 1 OS=Synechococcus sp. (strain A... [more]
CH601_AZOSB3.165e-2543.9560 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) ... [more]
CH60_RHOS54.133e-2543.9260 kDa chaperonin OS=Rhodobacter sphaeroides (stra... [more]
CH60_RHOPA4.133e-2543.9260 kDa chaperonin OS=Rhodopseudomonas palustris GN... [more]
CH60_PORG34.133e-2543.5460 kDa chaperonin OS=Porphyromonas gingivalis (str... [more]
CH60_LACBA4.133e-2546.7160 kDa chaperonin OS=Lactobacillus brevis (strain ... [more]
CH60_CRIGR4.133e-2545.2760 kDa heat shock protein, mitochondrial OS=Cricet... [more]
CH604_BRASB4.133e-2538.9660 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain ... [more]
CH601_SPHAL4.133e-2542.9560 kDa chaperonin 1 OS=Sphingopyxis alaskensis GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
back to top