CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PETMO (60 kDa chaperonin OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 62/149 (41.61%), Postives = 91/149 (61.07%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPA 443
            KEKK R+EDAL+AT+AA           TLLR    V+    TL  DE K+GA +V ++L  P+K I +NAG+  +++ EK++  D+ KYGY+     Y ++  +GIIDPTKV R  L++A+S+A   L ++ +V E  + E  P MPA
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVAGGGVTLLRAKKAVEEFANTLSGDE-KIGAQLVAKSLDAPVKQIIRNAGLEPAIIIEKIIEKDDSKYGYDVLKERYVNMFESGIIDPTKVTRSALQNAASIASMLLTTEVLVAEEPKEEKGPEMPA 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_OCHA4 (60 kDa chaperonin OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A  + ++ D+E  G +IV+RAL  P + I  NAG   SV+  K+L + +  YGYN A G + DL+ AG++DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASAKISA--KGINADQE-AGINIVRRALQAPARQITTNAGEEASVIVGKILENASETYGYNTANGEFGDLIKAGVVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NOVAD (60 kDa chaperonin OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 62/146 (42.47%), Postives = 93/146 (63.70%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KE+K RV+DAL+AT+AA            LL  +  ++ +K    ND++  G DIV+RA+  P++ IA NAG +G+VVS  +L  ++   G+NAAT  YE+L AAG+IDPTKVVR  L+ A+SV+   + ++  + E  + +PAMP
Sbjct:  390 KERKDRVDDALHATRAAVEEGIVPGGGTALLYATKALEGLKGA--NDDQTKGIDIVRRAIQAPIRQIAANAGHDGAVVSGNLLRENDENQGFNAATDTYENLKAAGVIDPTKVVRTALQDAASVSGLLITTEAAISEKPDDKPAMP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_METSS (60 kDa chaperonin OS=Methylovorus sp. (strain SS1 / DSM 11726) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 71/157 (45.22%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSGY 470
            KEKK RV+DAL+AT+AA            LLR  S++  +K   DN ++  G  IV RA+  PL+ IA NAG   SVV  KVL+   + +GYNAATG Y DL+  G++DPTKV R  L++A+SVA   L +D  + E+ KE + A+PA   M + GY
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSRIVNLKG--DNGDQDAGIRIVLRAIEAPLRAIAANAGDEPSVVINKVLAGSGN-FGYNAATGEYADLVETGVVDPTKVTRTALQNAASVASLILTTDASIAELPKEEKAAVPA---MPDMGY 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FRAP2 (60 kDa chaperonin OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KEKK RV+DAL+AT+AA            L+R    +D +    DND++  G  ++K+A+  PL+ I  NAG   SVV  +V + + + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ +V EIKE  PAMP G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGLVG--DNDDQNHGIALLKKAIEAPLRQIVSNAGGESSVVVNEVKAKEGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMVAEIKEDAPAMPMG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DICTD (60 kDa chaperonin OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK R+EDAL+ATKAA            L+R    +D IK  +DN++E++G +IV+R+L  PLKLIA NAG  GS+++EKV   D    GY+AA   + ++  AGI+DP KV R  L++A+S+A   L ++ +V E  E E   P   P
Sbjct:  390 KEKKHRIEDALSATKAAVEEGIVPGGGVALIRTIKALDDIK--VDNEDERIGVEIVRRSLDVPLKLIANNAGKEGSIIAEKVKEMDG-PMGYDAARDRFVNMFDAGIVDPCKVTRSALQNAASIAALVLTTEGLVAEKPEKEKQTPPPPP 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BART1 (60 kDa chaperonin OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=groL PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KEKK RV+DALNAT+AA            LLR +S   A+     N +++ G +IV+RAL  P + IA NAG   +++  KVL ++   YGYN ATG + DL+A GI+DP KVVR  L++A+S+A   + ++ +V E+ +   P P MPAG
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRAAS---ALTVKGGNPDQEAGINIVRRALQAPARQIATNAGEEAAIIVGKVLENNADTYGYNTATGEFGDLIALGIVDPVKVVRSALQNAASIASLLITTEAMVAEMPKKDTPMPPMPAG 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SORC5 (60 kDa chaperonin 2 OS=Sorangium cellulosum (strain So ce56) GN=groL2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 68/159 (42.77%), Postives = 102/159 (64.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSGYGY 476
            KEKK RVEDAL+AT+AA            L+R  S ++ +K    NDE++ G +I++RA+  PL+ I+ NAG  GS+V +KV    +  YGYNAA+G+Y +L+  G+IDP KVVR  L++A+SVA   L ++ ++ E  KE +PA  AG    ++G+G+
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRAQSSLEKLKV---NDEQRFGVNIIRRAIEEPLRQISANAGEEGSIVVQKVRDGKD-SYGYNAASGDYGNLLEMGVIDPVKVVRSALQNAASVASLMLTTEALIAERPKEEKPA--AGGA--HAGHGH 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHOP5 (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris (strain BisA53) GN=groL2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 7.050e-25
Identity = 60/157 (38.22%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DA++AT+AA            LLR S ++  +K    ND++K G +IV++AL +P + IA NAG +GSV+  K+L  D + YG+++ +G Y +L++ GIIDPTKVVR  +++A+SVA   + ++ ++ E+  P+     G      G G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLKTK--NDDQKTGVEIVRKALSWPARQIAINAGEDGSVIVGKILEKDQYNYGFDSQSGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITTEAMIAEL--PKKGNSGGGMPPGGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEBR (60 kDa chaperonin OS=Thermoanaerobacter brockii GN=groL PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 63/146 (43.15%), Postives = 90/146 (61.64%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK R+EDAL ATKAA            LL +   V  + ++L+ D  K GA IV RAL  P++ IA NAGV+GSV+ EK+ ++ +  +GY+A    + D+  AGI+DPTKV R  L++A+S+A   L ++ +VV+I E    MP
Sbjct:  388 KEKKHRIEDALAATKAAVEEGIVPGGGIALLNVIEDVQKVVDSLEGDF-KTGAKIVLRALEEPVRQIATNAGVDGSVIVEKIKAAKDPNFGYDAYKEEFTDMFKAGIVDPTKVTRTALQNAASIASMILTTEAIVVDIPEKNTGMP 532          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_PETMO7.050e-2541.6160 kDa chaperonin OS=Petrotoga mobilis (strain DSM... [more]
CH60_OCHA47.050e-2542.0460 kDa chaperonin OS=Ochrobactrum anthropi (strain... [more]
CH60_NOVAD7.050e-2542.4760 kDa chaperonin OS=Novosphingobium aromaticivora... [more]
CH60_METSS7.050e-2545.2260 kDa chaperonin OS=Methylovorus sp. (strain SS1 ... [more]
CH60_FRAP27.050e-2542.5760 kDa chaperonin OS=Francisella philomiragia subs... [more]
CH60_DICTD7.050e-2543.3360 kDa chaperonin OS=Dictyoglomus turgidum (strain... [more]
CH60_BART17.050e-2543.0560 kDa chaperonin OS=Bartonella tribocorum (strain... [more]
CH602_SORC57.050e-2542.7760 kDa chaperonin 2 OS=Sorangium cellulosum (strai... [more]
CH602_RHOP57.050e-2538.2260 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH60_THEBR9.207e-2543.1560 kDa chaperonin OS=Thermoanaerobacter brockii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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