CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SYMTH (60 kDa chaperonin OS=Symbiobacterium thermophilum GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 449
            KEKKLR+EDALNAT+AA            LL+    +D + +TL+ DE KVGA IV+RA+  PL+ I +N G+ GSVV EKV +     +G++A    Y D++AAGIIDP KV R  L++A+S+A   L ++ +V E  E +   PA N
Sbjct:  390 KEKKLRIEDALNATRAAVEEGIVAGGGVALLQTQKAIDELIKTLEGDE-KVGAQIVRRAVEEPLRCIVENGGLEGSVVVEKVRTLPVG-HGFDAMKEEYVDMVAAGIIDPVKVTRSALQNAASIAALILTTEALVTEKPEKKENNPAPN 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PROA2 (60 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 67/152 (44.08%), Postives = 94/152 (61.84%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KEKK RVEDAL+AT+AA            L+R +  +DA     +N+++K G DI++RAL  PL+ I  N G  +G+VV EKV +S+   YG+NA T  Y +L+ AG++DPTKV R  LE+A+SVA   L ++  + +IKE     P MP G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVAGGGVALIRAAKALDATNP--ENEDQKTGVDIIRRALEEPLRQIVANTGTTDGAVVVEKVKNSEGD-YGFNARTEEYMNLIEAGVVDPTKVTRTALENAASVAGILLTTEAAITDIKEDGSDMPPMPGG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NEIMF (60 kDa chaperonin OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + ++ +     N ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PAMP    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHT--GNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NEIMA (60 kDa chaperonin OS=Neisseria meningitidis serogroup A GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 66/155 (42.58%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + ++ +     N ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PAMP    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHT--GNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAMPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_METFK (60 kDa chaperonin OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 69/158 (43.67%), Postives = 90/158 (56.96%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPMDNSGY 470
            KEKK RVEDAL+AT+AA            LLR  S +  +K   DN ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA+ G Y DL+  G++DP KV R  L++A+SVA   L +D +V E+  +E  PAMP    M   G+
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARSSIKELKG--DNPDQDAGIKIVLRAIEEPLRQIVANAGDEPSVVVNKVLEGTGN-YGYNASNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAELPKEEAAPAMPDAGGMGGMGF 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GEOSL (60 kDa chaperonin OS=Geobacter sulfurreducens GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 66/151 (43.71%), Postives = 97/151 (64.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE---IKEPEPAMPAG 446
            KEKK RVEDAL+AT+AA             LR  + +DA+       E++ G +++KR+L  P++ IA+NAGV+GS+V +KV +S +  +GYNAA   Y D++AAGIIDPTKV R  L++A+SVA   L ++ ++ +    + P PAMP G
Sbjct:  390 KEKKARVEDALHATRAAVDEGIVPGGGVAYLRALASLDALSLPT---EQQFGVNVIKRSLEEPIRQIAQNAGVDGSIVVDKVKNSKD-AFGYNAAEDEYVDMLAAGIIDPTKVSRSALQNAASVAGLMLTTEAMIADKPKEEAPMPAMPGG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GEOSF (60 kDa chaperonin OS=Geobacter sp. (strain FRC-32) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK RVEDAL+AT+AA             LR  S +DA+       E++ G +++KRAL  P++ IA+NAGV+GS+V +KV +  +  +GYNAA   Y D++ AGIIDPTKV R  L++ASS+A   L ++ ++ +  + E AMPA
Sbjct:  389 KEKKARVEDALHATRAAVDEGIVPGGGVAYLRAMSTLDALNLPT---EQQFGVNVIKRALEEPIRQIAQNAGVDGSIVVDKVKNGKD-AFGYNAADDEYVDMIQAGIIDPTKVSRSALQNASSIAGLMLTTEAMIADKPKEEGAMPA 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 68/153 (44.44%), Postives = 97/153 (63.40%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 458
            KE+KLR+EDAL ATKAA             + +  +V+  K T D  + ++G  I+ ++L  PL+ IA NAGV GSV+ EKV +S+    GY+A  G Y +++ +GI+DPTKV R  L++A+SV+ TFL ++  V EI + EPAMPA G  MD
Sbjct:  388 KERKLRIEDALAATKAAVEEGIVPGGGTAYINVIKEVE--KLTSDVQDTELGIKIIVKSLEEPLRQIASNAGVEGSVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLL2 (60 kDa chaperonin OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 67/159 (42.14%), Postives = 98/159 (61.64%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLR-LSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R +    +A+    DN+++K G +I++RAL  PL+ I  N G  +G+VV EKV +++   +G+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + +IKE +  MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLANAVA---DNEDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLEKVKAAEGD-FGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEAAITDIKEEKSDMPAMPPGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BARQU (60 kDa chaperonin OS=Bartonella quintana GN=groL PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 65/157 (41.40%), Postives = 97/157 (61.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR ++ + AIK +  N +++ G +IV+RAL  P + IA NAG   +++  KVL ++   +GYN ATG + DL+A GI+DP KVVR  L++A+S+A   + ++ +V E+ + +  MP   PM   G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRAANAL-AIKGS--NPDQEAGINIVRRALQAPARQIATNAGEEAAIIVGKVLENNADTFGYNTATGQFGDLIALGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPKKDTPMP---PMPGGGMG 540          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_SYMTH9.207e-2544.9760 kDa chaperonin OS=Symbiobacterium thermophilum ... [more]
CH60_PROA29.207e-2544.0860 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH60_NEIMF9.207e-2542.5860 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIMA9.207e-2542.5860 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_METFK9.207e-2543.6760 kDa chaperonin OS=Methylobacillus flagellatus (... [more]
CH60_GEOSL9.207e-2543.7160 kDa chaperonin OS=Geobacter sulfurreducens GN=g... [more]
CH60_GEOSF9.207e-2544.2260 kDa chaperonin OS=Geobacter sp. (strain FRC-32)... [more]
CH60_CLOBB9.207e-2544.4460 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CHLL29.207e-2542.1460 kDa chaperonin OS=Chlorobium limicola (strain D... [more]
CH60_BARQU9.207e-2541.4060 kDa chaperonin OS=Bartonella quintana GN=groL P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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