CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROMM (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9313) GN=groL1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.207e-25
Identity = 68/159 (42.77%), Postives = 95/159 (59.75%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA----GNPMDNSG 467
            K +KLR+EDALNAT+AA           TLL LS  +  + E L ND+++ G +IV+RAL  P + IA NAG NG VV  ++   +    G+NA +  YEDL+ AGI+D TKVVR  L+ A S+A   + ++ V+ +  +PEP  PA    G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGTTLLHLSKGLSKLAEQL-NDDQRTGVEIVQRALSAPARQIAINAGENGDVVISEIQRLNK---GFNAISSTYEDLLEAGILDATKVVRLALQDAVSIASMMVTTELVIAD--KPEPPAPAGDGGGDPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMDNSGY 470
            EKK RV DALNATKAA            LL  S ++D +     N ++K+G  I++ AL  P+  IA NAGV G+VV  K+L  DN   GY+AA G Y D++ AGIIDP KV+R  L  A+SV+     ++ +VVE+ + E  +PA G  M    Y
Sbjct:  422 EKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTA--NFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDEKEVPAMGGGMGGMDY 575          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PELPB (60 kDa chaperonin OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 65/158 (41.14%), Postives = 95/158 (60.13%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    +D  +   DN+++K G +I++RAL  PL+ I  N G  +G+VV E+V +     +G+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + ++KE +  MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLD--RAIADNEDQKTGIEIIRRALEEPLRQIVANTGTTDGAVVLERVKAGTGD-FGFNARTEQYENLVEAGVVDPTKVTRSALENAASVASILLTTEAAITDVKEEKSDMPAMPPGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_METI4 (60 kDa chaperonin OS=Methylacidiphilum infernorum (isolate V4) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 67/150 (44.67%), Postives = 96/150 (64.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 446
            KEKK RVEDAL+AT+AA            LLR    ++ +  +L  DE+ +GA+IV +AL YPLK +A NAG+ GSV+  +V +   ++ G++ A  +Y D+  AGI+DPTKV R  LE+A+S+A   L ++ +V EI  KE +PA PAG
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRCQKAIEGL--SLKGDEQ-IGANIVYKALEYPLKTLADNAGLEGSVIVNEVKAKKGNE-GFDVAKRSYVDMFEAGIVDPTKVTRTALENAASIAGLLLTTEAMVTEIPEKEKKPATPAG 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 71/157 (45.22%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K R+EDALNAT+AA            L+ +   V A++E  D    + G +IV RAL  P++ IA NAG+ GSV+ EKV  S   + GYNAA GN+E+++ AGI+DPTKV R  L++A+SVA   L ++ VV +  E  PA  AG  MD S  G
Sbjct:  388 KEQKYRIEDALNATRAAVEEGYVAGGGTALIDVIESVAALEEEGD---VQTGINIVLRALEEPVRQIATNAGLEGSVIVEKV-KSQPVEVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAVVADKPEDNPAPAAG--MDPSAMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FRATT (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis GN=groL PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G  ++++A+  PL+ I  NAG   SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ ++ EIKE  PAMP G  M
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNYGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FRAT1 (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G  ++++A+  PL+ I  NAG   SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ ++ EIKE  PAMP G  M
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNYGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_EUBE2 (60 kDa chaperonin OS=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 68/148 (45.95%), Postives = 91/148 (61.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE KLR+EDALNAT+AA             +  S KV  + +TL  DE K+GA I+ +AL  PL  IA NAG+ G+V+  KV  S+    G++A    Y +++ AGI+DP KV R  L++A+SVA T L ++ VV  IKE  PAMPAG
Sbjct:  388 KEAKLRMEDALNATRAAVEEGVVSGGGSAYIHASKKVAELVKTLSGDE-KIGAQIILKALEAPLFHIAYNAGLEGAVIINKVRESEVGT-GFDAYKEEYVNMIDAGILDPAKVTRSALQNATSVASTLLTTESVVANIKEDAPAMPAG 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 68/153 (44.44%), Postives = 97/153 (63.40%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 458
            KE+KLR+EDAL ATKAA             + + + V+  K T D  + ++G  I+ ++L  PL+ IA NAGV GSV+ EKV +S+    GY+A  G Y +++ +GI+DPTKV R  L++A+SV+ TFL ++  V EI + EPAMPA G  MD
Sbjct:  388 KERKLRIEDALAATKAAVEEGIVPGGGTAYINVINAVE--KLTSDVQDTELGIKIIVKSLEEPLRQIASNAGVEGSVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BORA1 (60 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 64/147 (43.54%), Postives = 87/147 (59.18%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK RVEDAL+AT+AA            LLR    +  ++   D  ++  G  ++ RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA PA
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALLRAKQAIAGLQG--DTPDQNAGIKLILRAVEEPLRTIVTNAGEEASVVVNNVLNGKGN-YGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELAEDKPAAPA 533          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_PROMM9.207e-2542.7760 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH62_CUCMA1.203e-2442.95Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
CH60_PELPB1.203e-2441.1460 kDa chaperonin OS=Pelodictyon phaeoclathratifor... [more]
CH60_METI41.203e-2444.6760 kDa chaperonin OS=Methylacidiphilum infernorum ... [more]
CH60_LACSS1.203e-2445.2260 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_FRATT1.203e-2441.0660 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRAT11.203e-2441.0660 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_EUBE21.203e-2445.9560 kDa chaperonin OS=Eubacterium eligens (strain A... [more]
CH60_CLOBA1.203e-2444.4460 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_BORA11.203e-2443.5460 kDa chaperonin OS=Bordetella avium (strain 197N... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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