CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AZOSE (60 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN=groL PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + +  +K   DN ++  G  IV RAL  PL+ I  NAG   SVV  +V+    + +GYNAATG Y DL+  G++DPTKV R  L++A+SVA   L +DC+V E+ E +P+M     M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARANLGTLKG--DNHDQDAGIKIVLRALEQPLREIVANAGDEPSVVVNRVVEGTGN-FGYNAATGEYGDLVDMGVLDPTKVERIALQNAASVAGLMLTTDCMVGELAEEKPSMGGMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 61/154 (39.61%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR+ S ++ +     ND+++VG +IV+RA+  P++ IA+NAG  GS++  K+    +  +G+NA TG + DL   G+IDP KVVR  L+ A+S+A   + ++ ++ E   K+ +P MP G  MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRVVSALNGLATA--NDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKQDFAFGWNAQTGEFGDLFQMGVIDPAKVVRAALQDAASIAGLLVTTEAMIAEKPKKDGQPQMPPGGGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BRASO (60 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ORS278) GN=groL2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 59/154 (38.31%), Postives = 99/154 (64.29%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 455
            KE+K RV+DA++AT+AA            LLR S ++  ++    N+++K G +IV++AL  P + IA NAG +GSV+  K+L  + + YG+++ +G+Y ++++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMP G  M
Sbjct:  390 KERKDRVDDAMHATRAAVEEGILPGGGVALLRASEQLKGVRTK--NEDQKTGVEIVRKALSAPARQIAINAGEDGSVIVGKILEKEQYAYGFDSQSGDYVNMVSKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKAAAGPAMPPGGGM 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_AZOC5 (60 kDa chaperonin 1 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.203e-24
Identity = 67/157 (42.68%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR    V+A+    +N +   G  IV RAL  P++ IA+N+GV GS+V  KVL S+ + +G+NA T  Y DL+A G++DP KVVR  L+ ASSVA   + ++ ++ E+ + +  MPA   M   G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVPGGGVALLRAKKAVEALSS--ENPDIAAGIKIVLRALEAPIRQIAENSGVEGSIVVGKVLESEGN-FGFNAQTEQYVDLVAEGVVDPAKVVRTALQDASSVASLLVTTEALIAELPKKDAGMPA---MPGGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RALSO (60 kDa chaperonin OS=Ralstonia solanacearum GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 66/150 (44.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAG 446
            KEKK RVEDAL+AT+AA            LLR  + +  +K    N ++  G  IV RA+  PL+ I  NAG   SVV   V++   + YGYNA+TG Y DL+  G++DPTKV R  L++A+SVA   L +DC V E+ + +  PAMP G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALLRARALISGLKGA--NADQDAGIKIVLRAMEEPLRQIVTNAGDEASVVVANVIAGKGN-YGYNASTGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAELPKDDAAPAMPGG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_JANMA (60 kDa chaperonin OS=Janthinobacterium sp. (strain Marseille) GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 67/157 (42.68%), Postives = 92/157 (58.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            LLR  +   AIK   DN +++ G  IV RA+  PL++I +NAG   SVV  KVL    + +GYNAA G Y D++  G++DP KV R  L++A+S+A   L +DC+V E+ E + A   G+     G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARA---AIKIKGDNPDQEAGIRIVLRAMEEPLRMIVQNAGEEASVVVAKVLEGKGN-FGYNAANGTYGDMVEMGVLDPAKVTRSALQNAASIAALLLTTDCMVAEVAEDKAAGGMGDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FRATN (60 kDa chaperonin OS=Francisella tularensis subsp. novicida (strain U112) GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 63/151 (41.72%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKK RV+DAL+AT+AA            L+R    +D +  T +ND++  G  ++++A+  PL+ I  NAG   SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ +V EIKE  PAMP G  M
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALIRAQKALDGL--TGENDDQNHGIALLRKAIEAPLRQIVSNAGGESSVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMVGEIKEAAPAMPMGGGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_EMIHU (60 kDa chaperonin, chloroplastic OS=Emiliania huxleyi GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 63/138 (45.65%), Postives = 93/138 (67.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKV-DAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE 413
            K++KLR+EDA+NATKAA           TL+ +++++ + +KETL  DE  +G  IV++AL  PLK IA NAG NGS++ E++  SD  + GYNAAT    D+  AGIIDP KV R  L++A+S+A   L ++C++V+
Sbjct:  390 KDRKLRLEDAVNATKAAVEEGIVPGGGTTLIHIAAELLEWVKETLTGDE-LLGGLIVEKALQAPLKKIALNAGENGSIIVERIKESD-FEIGYNAATNEIVDMYEAGIIDPAKVTRSTLQNAASIASMILTTECIIVD 525          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DICNV (60 kDa chaperonin OS=Dichelobacter nodosus (strain VCS1703A) GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 69/157 (43.95%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +K   DN +++VG DI +RA+ YPL+ I  NAG   +VV E+V S   +  GY+AATG Y D++AAGIIDPTKV R  L++A+SVA   + ++ +V EI + E     G+  D  G G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGIVPGGGVALIRAINSIVDLKG--DNYDQQVGIDIARRAMEYPLRTIVSNAGSEAAVVLERVKSGKGND-GYDAATGQYVDMVAAGIIDPTKVTRSALQNAASVAGLMITTEAMVSEIPQKE----EGHHHDMGGMG 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DESHY (60 kDa chaperonin OS=Desulfitobacterium hafniense (strain Y51) GN=groL PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 68/155 (43.87%), Postives = 91/155 (58.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKKLR+EDAL AT+AA          C L+  +  +D++K T D   EK G  IV RAL  PL+ IA NAG  GS+V EKV +      G+NA T  YED++AAGI+DP KV R  L++A+S+A   L ++C+V +I   +    A   M   G
Sbjct:  388 KEKKLRIEDALAATRAAVEEGIVAGGGCALVDAAKALDSLKLTGD---EKTGVAIVYRALEEPLRQIANNAGFEGSIVVEKVRNG-GRGVGFNALTEAYEDMIAAGIVDPAKVTRSALQNAASIAAMLLTTECLVSDIPSKDNGAAAMAGMGGMG 538          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_AZOSE1.203e-2443.8760 kDa chaperonin OS=Azoarcus sp. (strain EbN1) GN... [more]
CH602_RHIME1.203e-2439.6160 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]
CH602_BRASO1.203e-2438.3160 kDa chaperonin 2 OS=Bradyrhizobium sp. (strain ... [more]
CH601_AZOC51.203e-2442.6860 kDa chaperonin 1 OS=Azorhizobium caulinodans (s... [more]
CH60_RALSO1.571e-2444.0060 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH60_JANMA1.571e-2442.6860 kDa chaperonin OS=Janthinobacterium sp. (strain... [more]
CH60_FRATN1.571e-2441.7260 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_EMIHU1.571e-2445.6560 kDa chaperonin, chloroplastic OS=Emiliania huxl... [more]
CH60_DICNV1.571e-2443.9560 kDa chaperonin OS=Dichelobacter nodosus (strain... [more]
CH60_DESHY1.571e-2443.8760 kDa chaperonin OS=Desulfitobacterium hafniense ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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