CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DEIGD (60 kDa chaperonin OS=Deinococcus geothermalis (strain DSM 11300) GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 67/159 (42.14%), Postives = 93/159 (58.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNY-EDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 476
            KEKK R EDAL+  ++A           TLLR+   V  + E+L+ DE   GA I+ RAL  P + IA NAG  GSV+   VL+SD  +YGYNAATG + +D++AAGI+DP KV R  L++A+S+    L ++ +V +  E E A  A    D  G  +
Sbjct:  388 KEKKHRYEDALSTARSAVEEGIVAGGGTTLLRVIPAVKQLAESLEGDEA-TGARILVRALEEPARQIAANAGDEGSVIVNAVLNSDKPRYGYNAATGEFVDDMVAAGIVDPAKVTRTALQNAASIGGLILTTEAIVSDKPEKEKAPAAAGAPDMGGMDF 545          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOBO (60 kDa chaperonin OS=Clostridium botulinum GN=groL PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 64/147 (43.54%), Postives = 92/147 (62.59%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KE+KLR+EDAL ATKAA             LR   +V+  K T +N E ++G  I++RAL  P++ IA NAG+ GSV+ +K+++      G++A  G Y +++  GI+DP KV R  L++A+SVA TFL ++CVV EI E  PA  A
Sbjct:  388 KERKLRIEDALAATKAAVEEGIVAGGGTAYLRAIKEVE--KLTDNNSEIRLGIAIIRRALEEPVRQIASNAGLEGSVIIDKIMNGQEGM-GFDALEGEYVNMVQKGIVDPAKVTRSALQNAASVASTFLTTECVVAEIPEKNPAPQA 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH607_BRAJA (60 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN=groL7 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 67/153 (43.79%), Postives = 93/153 (60.78%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAGNPM 455
            KEKK RVEDALNAT+AA            LLR    V  +  T  ND+ + G +IV +AL  P++ I++NAGV GS+V  K+L + +  +G++A   +Y D++  GIIDP KVVR  L+ ASSVA   + ++ +V E   K+  PAMPAG  M
Sbjct:  390 KEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRL--TNANDDVQAGINIVLKALEAPIRQISENAGVEGSIVVGKILENKSETFGFDAQNEDYVDMVEKGIIDPAKVVRTALQDASSVAGLLVTTEAMVAEAPKKDAPPAMPAGGGM 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_VIBC3 (60 kDa chaperonin 2 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=groL2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 65/147 (44.22%), Postives = 94/147 (63.95%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMP 440
            KEKK RVEDAL+AT+AA            L+R +SK+ ++    DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + + + YGYNAATG Y+D++  GI+DPTKV R  L+ A+SVA   + ++ ++ E+ K+  PAMP
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSLVG--DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGN-YGYNAATGVYDDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMITELPKKDAPAMP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_RHOPA (60 kDa chaperonin 2 OS=Rhodopseudomonas palustris GN=groL2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 60/150 (40.00%), Postives = 94/150 (62.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KE+K RV+DA++AT+AA            LLR S ++  +K    ND++K G +IV+RAL  P + IA NAG +GSV+  KVL  + + +G+++ +G Y DL+  GIIDPTKVVR  +++A+SVA   + ++ ++ E+ +   A   G P
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGLKTK--NDDQKTGVEIVRRALSAPARQIAINAGEDGSVIVGKVLEKEQYAFGFDSQSGEYGDLVKKGIIDPTKVVRTAIQNAASVAALLITTEAMIAELPKKGGAGAGGMP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROMT (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain NATL2A) GN=groL2 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 66/157 (42.04%), Postives = 90/157 (57.32%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP--EPAMPAGNPMDNSG 467
            K +KLR+EDALNAT+AA           TLL LS  +  + + L+ D+ K G +I+KRAL  P K IA NAG NG VV   +        G+NA TG YEDL+ AGI+D +KV+R  L+ A S+A   + ++ V+ +  EP   P    G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAIEEGIVAGGGTTLLELSEGLGDLAKKLEGDQ-KTGVEIIKRALTAPTKQIAINAGFNGDVVVSDIKRLGK---GFNAQTGEYEDLLEAGILDASKVIRLALQDAVSIASLLITTEVVIADKPEPPSAPGAEGGDPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROM0 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9301) GN=groL1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.571e-24
Identity = 66/155 (42.58%), Postives = 91/155 (58.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            K KKLR+ED+LNATKAA           TL+ +S  +  + +T   D+ + G +IVK AL  P K IAKNAG NG VV  ++   +    G+NA +G YEDL  +GI+DPTKV+R  L+ + S+A   L ++  + +I EPE A P G   D  G
Sbjct:  388 KYKKLRIEDSLNATKAAIEEGVVSGGGQTLIEISDDLLNLSKT-STDDLRTGINIVKEALLEPTKQIAKNAGFNGDVVVAEIKRLNK---GFNANSGKYEDLKDSGILDPTKVIRLALQDSVSIAAMLLTTEVAMADIPEPEAAGPGGPGADPMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHOCS (60 kDa chaperonin OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DA++AT+AA            LL  +  +D  K T  N+++K G DIV++AL  P++ IA+NAG +GSV+  K+L      +G+NA  G Y D+   G+IDPTKVVR  L+ A+SVA   + ++ ++ E  +PE   PAG P    G G
Sbjct:  390 KERKDRVDDAMHATRAAVEEGIVAGGGVALLYATKALD--KLTAVNEDQKFGIDIVRKALQAPVRQIAQNAGFDGSVIVGKLLEKGETNFGFNAQAGEYGDMFKFGVIDPTKVVRAALQDAASVAGLLITTEAMIGE--KPEKKAPAGAPGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RALME (60 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 67/150 (44.67%), Postives = 88/150 (58.67%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 446
            KEKK RVEDAL+AT+AA            LLR  + +  +    +N ++  G  IV RA+  PL+ I  NAG   SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARAAIAGLHG--ENPDQNAGIKIVLRAMEEPLRQIVLNAGEEASVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAESPKEESAPAMPGG 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NEIGO (60 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + ++ +     N ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PA+P    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHT--GNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIGMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEEKPAVPDMGGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_DEIGD1.571e-2442.1460 kDa chaperonin OS=Deinococcus geothermalis (str... [more]
CH60_CLOBO1.571e-2443.5460 kDa chaperonin OS=Clostridium botulinum GN=groL... [more]
CH607_BRAJA1.571e-2443.7960 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN... [more]
CH602_VIBC31.571e-2444.2260 kDa chaperonin 2 OS=Vibrio cholerae serotype O1... [more]
CH602_RHOPA1.571e-2440.0060 kDa chaperonin 2 OS=Rhodopseudomonas palustris ... [more]
CH602_PROMT1.571e-2442.0460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_PROM01.571e-2442.5860 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_RHOCS2.051e-2440.7660 kDa chaperonin OS=Rhodospirillum centenum (stra... [more]
CH60_RALME2.051e-2444.6760 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH60_NEIGO2.051e-2441.9460 kDa chaperonin OS=Neisseria gonorrhoeae GN=groL... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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