CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUSU (60 kDa chaperonin OS=Brucella suis GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUSI (60 kDa chaperonin OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUO2 (60 kDa chaperonin OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUME (60 kDa chaperonin OS=Brucella melitensis GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUMB (60 kDa chaperonin OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUC2 (60 kDa chaperonin OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUAB (60 kDa chaperonin OS=Brucella abortus GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUA2 (60 kDa chaperonin OS=Brucella abortus (strain 2308) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRUA1 (60 kDa chaperonin OS=Brucella abortus (strain S19) GN=groL PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 94/157 (59.87%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+K+ A      N +++ G +IV+RA+  P + I  NAG   SV+  K+L + +  +GYN A G Y DL++ GI+DP KVVR  L++A+SVA   + ++ ++ E+ + + A PAG P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRASTKITAKGV---NADQEAGINIVRRAIQAPARQITTNAGEEASVIVGKILENTSETFGYNTANGEYGDLISLGIVDPVKVVRTALQNAASVAGLLITTEAMIAELPKKD-AAPAGMPGGMGGMG 542
[Close]
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/146 (43.84%), Postives = 86/146 (58.90%), Query Frame = 3 
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK RVEDAL+AT+AA            LLR    +  +K   D  ++  G  ++ RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA P
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALLRAKQAIADLKG--DTADQNAGIKLILRAVEEPLRTIVTNAGEEASVVVNNVLNGKGN-YGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELSEDKPAAP 532
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BRUSU2.051e-2440.7660 kDa chaperonin OS=Brucella suis GN=groL PE=3 SV... [more]
CH60_BRUSI2.051e-2440.7660 kDa chaperonin OS=Brucella suis (strain ATCC 23... [more]
CH60_BRUO22.051e-2440.7660 kDa chaperonin OS=Brucella ovis (strain ATCC 25... [more]
CH60_BRUME2.051e-2440.7660 kDa chaperonin OS=Brucella melitensis GN=groL P... [more]
CH60_BRUMB2.051e-2440.7660 kDa chaperonin OS=Brucella melitensis biotype 2... [more]
CH60_BRUC22.051e-2440.7660 kDa chaperonin OS=Brucella canis (strain ATCC 2... [more]
CH60_BRUAB2.051e-2440.7660 kDa chaperonin OS=Brucella abortus GN=groL PE=3... [more]
CH60_BRUA22.051e-2440.7660 kDa chaperonin OS=Brucella abortus (strain 2308... [more]
CH60_BRUA12.051e-2440.7660 kDa chaperonin OS=Brucella abortus (strain S19)... [more]
CH60_BORPD2.051e-2443.8460 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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