CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BORPA (60 kDa chaperonin OS=Bordetella parapertussis GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 66/157 (42.04%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            LLR    +  +K   D  ++  G  ++ RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA     P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALLRAKQAITGLKG--DTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMEDKPAAAPAMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BORBR (60 kDa chaperonin OS=Bordetella bronchiseptica GN=groL PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 66/157 (42.04%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            LLR    +  +K   D  ++  G  ++ RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA     P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALLRAKQAITGLKG--DTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMEDKPAAAPAMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_RHILO (60 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 64/157 (40.76%), Postives = 90/157 (57.32%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S  ++A+     N ++  G  IV+RAL  P + IA NAG   S+V+ K+L +    +G+NA TG Y D++A GI+DP KVVR  L+ A+SVA   + ++ ++ E  + E A   G P    G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVPGGGVALLRASLSINAVGA---NSDQTAGISIVRRALQAPARQIAANAGAEASIVAGKILENKGATFGFNAQTGEYGDMIAMGIVDPVKVVRTALQDAASVAGLLVTTEAMIAEAPKKESAGGGGMPGGMGGGG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_PROM3 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9303) GN=groL2 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 67/159 (42.14%), Postives = 94/159 (59.12%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA----GNPMDNSG 467
            K +KLR+EDALNAT+AA           TLLRLS  +  + E   N +++ G +IV+RAL  P + IA NAG NG VV  ++   +    G+NA +  YEDL+ AGI+D TKVVR  L+ A S+A   + ++ V+ +  +PEP  PA    G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAVEEGIVAGGGTTLLRLSKGLRKLAEQQLNGDQRTGVEIVQRALSAPARQIAINAGENGDVVISEMQRLNK---GFNAISSTYEDLLGAGILDATKVVRLALQDAVSIASMMVTTELVIAD--KPEPPAPAGDGGGDPMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROM9 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=groL1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.051e-24
Identity = 65/158 (41.14%), Postives = 94/158 (59.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPMDNSG 467
            K KKLR+ED+LNATKAA           TL+ +S ++  + +   +D+ + G +IVK AL  P K IAKNAG NG VV  ++   +    G+NA +G YE+L  +GI+DPTKV+R  L+ + S+A   L ++  + +I EPE   P  P G+PM   G
Sbjct:  388 KYKKLRIEDSLNATKAAIEEGVVSGGGQTLIEISDELLNLSQK-SSDDLRTGINIVKEALLEPTKQIAKNAGFNGDVVVAEIKRLNK---GFNANSGKYENLKESGILDPTKVIRLALQDSVSIAAMLLTTEVAIADIPEPEAAAPGGPGGDPMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THEEB (60 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 61/149 (40.94%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 449
            K++KLR+EDA+NATKAA           TL+ L+ ++          EE +GA+IV+RAL  PL+ IA+NAG NG+++ E+V        GY+AA   Y ++  AGI+DP KV R  L++A+S+A   L ++C++V+  EP+   PAG+
Sbjct:  388 KDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKP-FDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECIIVDKPEPKENNPAGS 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHILV (60 kDa chaperonin OS=Rhizobium leguminosarum bv. viciae GN=groL PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK R++DALNAT+AA            L R S+K+  +K    ND+++ G +IV+RAL   ++ IA+NAG   S+V  KVL  +   +GYNA T  Y D++A GI+DP KVVR  L++A+SVA   + ++ ++ E+  P+   PAG P    G G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGIALARSSTKI-TVKGA--NDDQEAGINIVRRALQSLVRQIAENAGDEASIVVGKVLDKNEDNFGYNAQTSEYGDMIAMGIVDPLKVVRTALQNAASVASLLITTEAMIAEL--PKKDAPAGMPGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PARL1 (60 kDa chaperonin OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            LL  S  V  + E  DN + + G +I++RAL  P++ I +NAGV GS+V +KVL S    +G++A    Y DL+AAGIIDPTKVVR  L+ A+S+A   + ++ ++ +  + +    AG P    G G
Sbjct:  389 KERKDRVDDALNATRAAVEEGIVPGGGTALLMASKAVGKLVE--DNRDIQAGINIIRRALEAPIRQIVENAGVEGSIVVQKVLESKQANFGFDAQKEEYCDLVAAGIIDPTKVVRTALQDAASIAGLLITTEAMIADAPKKDNGAAAGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NEIMB (60 kDa chaperonin OS=Neisseria meningitidis serogroup B GN=groL PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + ++ +     N ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PA+P    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHT--GNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NEIM0 (60 kDa chaperonin OS=Neisseria meningitidis serogroup C (strain 053442) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 65/155 (41.94%), Postives = 89/155 (57.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            LLR  + ++ +     N ++  G  IV RA+  PL+ I  NAG   SVV  KVL    + YGYNA +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PA+P    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLHT--GNADQDAGVQIVLRAVESPLRQIVANAGGEPSVVVNKVLEGKGN-YGYNAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPEDKPAVPDMGGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BORPA2.051e-2442.0460 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]
CH60_BORBR2.051e-2442.0460 kDa chaperonin OS=Bordetella bronchiseptica GN=... [more]
CH603_RHILO2.051e-2440.7660 kDa chaperonin 3 OS=Rhizobium loti GN=groL3 PE=... [more]
CH602_PROM32.051e-2442.1460 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH601_PROM92.051e-2441.1460 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH60_THEEB2.679e-2440.9460 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH60_RHILV2.679e-2441.4060 kDa chaperonin OS=Rhizobium leguminosarum bv. v... [more]
CH60_PARL12.679e-2440.7660 kDa chaperonin OS=Parvibaculum lavamentivorans ... [more]
CH60_NEIMB2.679e-2441.9460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]
CH60_NEIM02.679e-2441.9460 kDa chaperonin OS=Neisseria meningitidis serogr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
back to top