CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LACPL (60 kDa chaperonin OS=Lactobacillus plantarum GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 68/157 (43.31%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K R+EDALNAT+AA            L+ +   V A+KET D    + G +IVKRAL  P++ IA+NAG+ GSV+ EK +       G+NAAT  + D++ AGI+DPTKV R  L++A+SV+   L ++ VV E  +PE   PA     N G G
Sbjct:  388 KERKYRIEDALNATRAAVEEGFVAGGGTALINVIKDVAALKETGD---VQTGINIVKRALEEPVRQIAENAGLEGSVIVEK-MKEQKPGVGFNAATDEWVDMIKAGIVDPTKVTRSALQNAASVSALLLTTEAVVAE--KPEENAPAAPAAPNPGMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FLAPJ (60 kDa chaperonin OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 67/140 (47.86%), Postives = 85/140 (60.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE 422
            KEKK RV+DAL+AT+AA            LLR  + +  IK   DN +E  G  IV RA+  PL+ I +NAG+ GSVV  KV       +GYNA T  Y D++ AGIIDP KV R  LE+A+SVA   L ++C +VEIKE
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALLRAKNVLKDIKA--DNADEATGIQIVSRAVEAPLRTIVENAGLEGSVVVAKVAEGSGD-FGYNAKTDEYVDMLKAGIIDPKKVTRVALENAASVAGMILTTECALVEIKE 526          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_COPPD (60 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 69/150 (46.00%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            KEKK RVEDA++ATKAA           TL++ S+ +D  K  L+NDE  +GA IVK+AL  P ++IA+NAG  G VV E+ L    +  G++A  G Y D+  AGIIDPTKV R  L++A+S+A   L ++ +VVE  E E A P   P
Sbjct:  389 KEKKHRVEDAVSATKAAMEEGIVAGGGVTLVKASTVLD--KLPLENDE-LIGATIVKKALMEPARVIAENAGFAGEVVVEE-LKKREYPVGFDAVKGEYVDMFEAGIIDPTKVTRSALQNAASIAAMVLTTEALVVEKPEQEKAQPGMPP 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLCH (60 kDa chaperonin OS=Chlorobium chlorochromatii (strain CaD3) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 66/158 (41.77%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R    ++  +   DN+++K+G +IV+RAL  PL+ I  N G  +G+VV EKV   +   +G+NA T  YE+L+ AG++DPTKV R  LE+A+SVA   L ++  + +IK+ +  MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVVGGGVALIRAIKGLNNAQA--DNEDQKIGIEIVRRALEEPLRQIVANTGTQDGAVVLEKVKEGEGD-FGFNARTETYENLVEAGVVDPTKVTRSALENAASVAGILLTTEAAITDIKDDKMDMPAMPPGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BRANA (Chaperonin CPN60, mitochondrial OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 65/146 (44.52%), Postives = 85/146 (58.22%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            EKK RV DALNATKAA            LL  S ++D +     N + K+G  I++ AL  P+  IA NAGV G+V+  K+L SDN   GY+AA G Y D++ +GIIDP KV+R  L  A+SV+     ++ VV EI   E A PA
Sbjct:  425 EKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLSTA--NFDHKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLESDNPDLGYDAAKGEYVDMVKSGIIDPVKVIRTALVDAASVSSLLTTTEAVVTEIPTKEDASPA 568          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BORPE (60 kDa chaperonin OS=Bordetella pertussis GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 66/157 (42.04%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            LLR    +  +K   D  ++  G  ++ RA+  PL+ I  NAG   SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA     P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVPGGGVALLRAKQAITGLKG--DTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMENKPAAAPAMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIBY (60 kDa chaperonin OS=Acinetobacter baumannii (strain AYE) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R  + ++ +K    N+++  G +I++RA+  PL+ I  NAG   SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGA--NEDQTAGINILRRAIEAPLRQIVANAGDEPSVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIBT (60 kDa chaperonin OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=groL PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R  + ++ +K    N+++  G +I++RA+  PL+ I  NAG   SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGA--NEDQTAGINILRRAIEAPLRQIVANAGDEPSVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIBC (60 kDa chaperonin OS=Acinetobacter baumannii (strain ACICU) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R  + ++ +K    N+++  G +I++RA+  PL+ I  NAG   SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGA--NEDQTAGINILRRAIEAPLRQIVANAGDEPSVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIB5 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB0057) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R  + ++ +K    N+++  G +I++RA+  PL+ I  NAG   SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGA--NEDQTAGINILRRAIEAPLRQIVANAGDEPSVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LACPL2.679e-2443.3160 kDa chaperonin OS=Lactobacillus plantarum GN=gr... [more]
CH60_FLAPJ2.679e-2447.8660 kDa chaperonin OS=Flavobacterium psychrophilum ... [more]
CH60_COPPD2.679e-2446.0060 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH60_CHLCH2.679e-2441.7760 kDa chaperonin OS=Chlorobium chlorochromatii (s... [more]
CH60_BRANA2.679e-2444.52Chaperonin CPN60, mitochondrial OS=Brassica napus ... [more]
CH60_BORPE2.679e-2442.0460 kDa chaperonin OS=Bordetella pertussis GN=groL ... [more]
CH60_ACIBY2.679e-2440.6560 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBT2.679e-2440.6560 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBC2.679e-2440.6560 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB52.679e-2440.6560 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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