CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIB3 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB307-0294) GN=groL PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 63/155 (40.65%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R  + ++ +K    N+++  G +I++RA+  PL+ I  NAG   SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGA--NEDQTAGINILRRAIEAPLRQIVANAGDEPSVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH603_SYNAS (60 kDa chaperonin 3 OS=Syntrophus aciditrophicus (strain SB) GN=groL3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 71/157 (45.22%), Postives = 95/157 (60.51%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSGY 470
            KEKK RVEDAL+AT+AA             +R    + A+ +    DEE+ G +IV+RAL  PL+ IA NAG  GS+V EKV  S N  +G++A T  Y D++ AGIIDPTKV R  L++A+SVA   L ++ ++ E  K+ EP MPA  P D   Y
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVAFIR---SIGALADAKLPDEEQQGLNIVRRALEEPLRQIAANAGCEGSIVVEKVKES-NGTHGFDAETEQYVDMLKAGIIDPTKVARFALQNAASVASLLLTTEAMIAEKPKKKEPPMPA-MPSDMGDY 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_THEVL (60 kDa chaperonin 1 OS=Thermosynechococcus vulcanus GN=groL1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.679e-24
Identity = 61/149 (40.94%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 449
            K++KLR+EDA+NATKAA           TL+ L+ ++          EE +GA+IV+RAL  PL+ IA+NAG NG+++ E+V        GY+AA   Y ++  AGI+DP KV R  L++A+S+A   L ++C++V+  EP+   PAG+
Sbjct:  388 KDRKLRLEDAINATKAAVEEGIVPGGGTTLVHLAPELSNWAAEHLTGEELIGANIVERALSAPLRRIAENAGQNGAIIVERVKEKP-FDVGYDAAKDEYVNMFDAGIVDPAKVTRSALQNAASIAGMVLTTECIIVDKPEPKENNPAGS 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_THETN (60 kDa chaperonin OS=Thermoanaerobacter tengcongensis GN=groL PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 62/152 (40.79%), Postives = 94/152 (61.84%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMD 458
            KEKK R+EDAL ATKAA            LL +   V  + ++L+ D  K GA IV +AL  P++ IA+NAGV+GS++ EK+ ++ +  +GY+A    + D++  GIIDPTKV R  L++A+S+A   L ++ +VV++ E E +   G  MD
Sbjct:  388 KEKKHRIEDALAATKAAVEEGIVPGGGVALLNVIEDVQKVVDSLEGDF-KTGAKIVLKALEAPVRQIAENAGVDGSIIVEKIKAAKDPNFGYDAYREEFTDMIKRGIIDPTKVTRTALQNAASIASMILTTEAIVVDVPEKEKSNIPGAGMD 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PARDP (60 kDa chaperonin OS=Paracoccus denitrificans (strain Pd 1222) GN=groL1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            L++ +  ++ +     N ++  G  I++RAL  P++ IA+NAGV+G+VV+ KV  S +  +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ E  +PEP  PAG   D  G G
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGA--NSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAE--KPEPKAPAGGMPDMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PARDE (60 kDa chaperonin OS=Paracoccus denitrificans GN=groL PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 63/157 (40.13%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            L++ +  ++ +     N ++  G  I++RAL  P++ IA+NAGV+G+VV+ KV  S +  +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ E  +PEP  PAG   D  G G
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALVQGAKVLEGLSGA--NSDQDAGIAIIRRALEAPMRQIAENAGVDGAVVAGKVRESSDKAFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVAGLLITTEAMIAE--KPEPKAPAGGMPDMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GEOUR (60 kDa chaperonin OS=Geobacter uraniireducens (strain Rf4) GN=groL PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 63/147 (42.86%), Postives = 95/147 (64.63%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK RVEDAL+AT+AA             LR  S +D++  +    E++ G +++KRAL  P++ IA+NAGV+GS+V +KV +  +  +GYNAA   Y D++ AGIIDPTKV R  L++ASS+A   L ++ ++ +  + E +MPA
Sbjct:  389 KEKKARVEDALHATRAAVDEGIVPGGGVAYLRAMSALDSLDLST---EQQFGVNVIKRALEEPIRQIAQNAGVDGSIVVDKVKNGKD-AFGYNAADDEYVDMIQAGIIDPTKVSRSALQNASSIAGLMLTTEAMIADKPKEEGSMPA 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH604_RHILO (60 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/160 (41.88%), Postives = 92/160 (57.50%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA---MPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LLR S+ + A      N ++  G +IV+RAL  P + IA NAG   S+V+ K+L +    +GYNA TG Y D++A GI+DP KVVR  L+ A+SVA   + ++ ++ E  + E A   MP G  M   G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGVALLRASANIKAAGA---NADQAAGINIVRRALQAPARQIASNAGAEASIVAGKILENKGATFGYNAQTGEYGDMIAMGIVDPVKVVRTALQDAASVAGLLVTTEAMIAEAPKKESAGGGMPGG--MGGGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_MOOTA (60 kDa chaperonin 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=groL2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KEKK+R+EDAL AT+AA            L+R  + +D ++   D   E  G  +V RAL  P++ IA NAGV+GSVV EKV  S +   G+NAAT  Y +L  AGI+DP KV R  LE+A+S+A   L ++ ++ +I E EP +P G
Sbjct:  388 KEKKMRIEDALAATRAAVEEGIVPGGGTALVRAQTALDGVQAQGD---ELTGVRLVYRALEEPMRQIAANAGVDGSVVVEKVRQSGD-SMGFNAATREYVNLFEAGIVDPLKVTRSALENAASIASLVLTTESLIADIPEEEPPVPGG 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_CHLAA (60 kDa chaperonin 2 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=groL2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 68/155 (43.87%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSS----DNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-----PAMP 440
            KE+K RVEDALNAT+AA            LL     +D +  T   +EE++  ++++RAL  PL+ +A NAG +GSVV E V +     +N+ YGY+  TG Y DLM AGIIDP KVVR  LE+A SVA   L ++ ++V+  EP+     P MP
Sbjct:  389 KERKARVEDALNATRAAVEEGIVPGGGVALLNAIPALDNV--TTQFEEERMALNVLRRALEEPLRQLATNAGEDGSVVVENVRNEQRKHNNNHYGYDVMTGTYVDLMQAGIIDPAKVVRSALENAISVAGMVLTTEALIVDAPEPKKKNGTPPMP 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ACIB32.679e-2440.6560 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH603_SYNAS2.679e-2445.2260 kDa chaperonin 3 OS=Syntrophus aciditrophicus (... [more]
CH601_THEVL2.679e-2440.9460 kDa chaperonin 1 OS=Thermosynechococcus vulcanu... [more]
CH60_THETN3.499e-2440.7960 kDa chaperonin OS=Thermoanaerobacter tengcongen... [more]
CH60_PARDP3.499e-2440.1360 kDa chaperonin OS=Paracoccus denitrificans (str... [more]
CH60_PARDE3.499e-2440.1360 kDa chaperonin OS=Paracoccus denitrificans GN=g... [more]
CH60_GEOUR3.499e-2442.8660 kDa chaperonin OS=Geobacter uraniireducens (str... [more]
CH604_RHILO3.499e-2441.8860 kDa chaperonin 4 OS=Rhizobium loti GN=groL4 PE=... [more]
CH602_MOOTA3.499e-2443.9260 kDa chaperonin 2 OS=Moorella thermoacetica (str... [more]
CH602_CHLAA3.499e-2443.8760 kDa chaperonin 2 OS=Chloroflexus aurantiacus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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