CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURS3 (60 kDa chaperonin 2 OS=Burkholderia sp. (strain 383) GN=groL2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 66/157 (42.04%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + A+  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAAL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGTGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHOCA (60 kDa chaperonin OS=Rhodobacter capsulatus GN=groL PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 63/148 (42.57%), Postives = 93/148 (62.84%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE+K RV+DALNAT+AA            L++ + K++ +  T  N ++  G  IV+RAL  PL+ IA+NAGV+G+VV+ KV  S +  +G+NA T  Y D+   G+IDP KV R  LE A+S+A   + ++C++ E  EP+ A PAG
Sbjct:  390 KERKDRVDDALNATRAAVQEGIIVGGGVALVQAAKKLNDL--TGANSDQDAGISIVRRALEAPLRQIAENAGVDGAVVAGKVRESADPAFGFNAQTEEYGDMFGFGVIDPAKVTRTALEDAASIAGLLITTECMIAEKPEPK-AAPAG 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RHILW (60 kDa chaperonin OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 64/151 (42.38%), Postives = 94/151 (62.25%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA---MPAG 446
            KEKK R++DALNAT+AA            LLR S+K+  +K    ND+++ G +IV+RAL   ++ IA+NAG   S+V  KVL  +   YGYNA T  + D++A GI+DP KVVR  L++A+SVA   + ++ ++ E+ + E A   MP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGIALLRSSTKI-TVKGA--NDDQEAGINIVRRALQSLVRQIAENAGDEASIVVGKVLDKNEDNYGYNAQTSEFGDMIAMGIVDPLKVVRTALQNAASVASLLITTEAMIAELPKKESAGGGMPGG 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HERAR (60 kDa chaperonin OS=Herminiimonas arsenicoxydans GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 62/144 (43.06%), Postives = 88/144 (61.11%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 434
            KEKK RVEDAL+AT+AA            LLR  + ++      DN +++ G  IV RA+  PL++I +NAG   SVV  KVL    + +GYNAA G Y D++  G++DP KV R  L++A+S+A   L +DC+V E+ E +PA
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRARANINVKG---DNSDQEAGIRIVLRAMEEPLRMIVQNAGEEASVVVAKVLEGKGN-FGYNAANGIYGDMVEMGVLDPAKVTRSALQNAASIAALLLTTDCMVAEVAEEKPA 529          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HELHP (60 kDa chaperonin OS=Helicobacter hepaticus GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 70/157 (44.59%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE--PEPAMPAGNPMDNSG 467
            KEKK RV+DAL+ATKAA            L+R S KV   K  L+ DE  +G DI+KRA+  PL  IA NAG +  VV  +V  +    +G+NA TG Y D+   GIIDP KV R  L++A SV+   L ++  + EIKE  P PAMP    M   G
Sbjct:  390 KEKKDRVDDALSATKAAVDEGIVIGGGSALIRASQKV---KLKLEGDEA-IGYDIIKRAIKAPLAQIATNAGYDAGVVVNEVEKNSKDGFGFNATTGEYVDMFKEGIIDPLKVTRVALQNAVSVSSLLLTTEATINEIKEDKPAPAMPDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOAB (60 kDa chaperonin OS=Clostridium acetobutylicum GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 62/151 (41.06%), Postives = 95/151 (62.91%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNP 452
            KE+K+R+EDAL ATKAA             + +  +V  +  T D  + +VG +I+ +AL  P++ IA NAG+ GSV+ EK+++S+    G++A    Y D+++ GI+DPTKV R  L++A+SVA TFL ++C V +I E + P MP G P
Sbjct:  388 KERKMRIEDALAATKAAVEEGIIAGGGTAYINVLPEVREL--TSDEPDVQVGINIIVKALEEPVRQIAANAGLEGSVIIEKIINSEKG-IGFDALHEKYVDMLSVGIVDPTKVTRSALQNAASVASTFLTTECAVADIPEKDKPEMPGGAP 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURTH (60 kDa chaperonin OS=Burkholderia thailandensis GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 66/157 (42.04%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + A+  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAAL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ANOFW (60 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 67/149 (44.97%), Postives = 93/149 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMP 440
            KE+KLR+EDALNAT+AA            L+ + SKV AI+   D   E  G  IV RA+  P++ IA+NAG+ GSV+ E+ L ++    G+NAATG + D++ AGI+DPTKV R  L++A+SVA  FL ++ VV +  E     P MP
Sbjct:  388 KERKLRIEDALNATRAAVEEGIVAGGGTALMNVYSKVAAIEAEGD---EATGVKIVLRAIEEPVRQIAQNAGLEGSVIVER-LKTEKPGIGFNAATGEWVDMIEAGIVDPTKVTRSALQNAASVAAMFLTTEAVVADKPEENKNTPGMP 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ACIBS (60 kDa chaperonin OS=Acinetobacter baumannii (strain SDF) GN=groL PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 61/146 (41.78%), Postives = 91/146 (62.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 440
            KEKK RV+DAL+AT+AA            L+R  + ++ +K    N+++  G +I++RA+  PL+ I  NAG   SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P
Sbjct:  390 KEKKDRVDDALHATRAAVEEGVVAGGGVALVRAVNALEGLKGA--NEDQTAGINILRRAIEAPLRQIVANAGDEPSVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAP 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_ROSCS (60 kDa chaperonin 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 68/156 (43.59%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLS----SDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE------PAMP 440
            KE+K RVEDALNAT+AA            LL   S +D ++   +  EE++  ++++RAL  PL+ +A NAG +GSVV  +V +     +N  YG++  TGNY DLM AGIIDP KVVR  LE+A SVA   L +D ++ E  EP+      P+MP
Sbjct:  389 KERKARVEDALNATRAAVEEGIVPGGGVALLNAISALDNVQTQFE--EERMALNVLRRALEEPLRQLAINAGEDGSVVVNQVRTLQREHNNPHYGFDVMTGNYVDLMQAGIIDPAKVVRSALENAVSVAGIVLTTDALITEAPEPKKNGARTPSMP 542          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_BURS33.499e-2442.0460 kDa chaperonin 2 OS=Burkholderia sp. (strain 38... [more]
CH60_RHOCA4.570e-2442.5760 kDa chaperonin OS=Rhodobacter capsulatus GN=gro... [more]
CH60_RHILW4.570e-2442.3860 kDa chaperonin OS=Rhizobium leguminosarum bv. t... [more]
CH60_HERAR4.570e-2443.0660 kDa chaperonin OS=Herminiimonas arsenicoxydans ... [more]
CH60_HELHP4.570e-2444.5960 kDa chaperonin OS=Helicobacter hepaticus GN=gro... [more]
CH60_CLOAB4.570e-2441.0660 kDa chaperonin OS=Clostridium acetobutylicum GN... [more]
CH60_BURTH4.570e-2442.0460 kDa chaperonin OS=Burkholderia thailandensis GN... [more]
CH60_ANOFW4.570e-2444.9760 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]
CH60_ACIBS4.570e-2441.7860 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH602_ROSCS4.570e-2443.5960 kDa chaperonin 2 OS=Roseiflexus castenholzii (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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