CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_ACAM1 (60 kDa chaperonin 2 OS=Acaryochloris marina (strain MBIC 11017) GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 60/151 (39.74%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            K++KLR+EDA+N+TKAA           TL  L  ++ +        EE +GA IV+RAL  PLK IA+NAG NG+V++E+V   +    G++A+   + D+ AAGI+DP KV R  L++A+S+A   L ++C++ +  EP+   P G  M
Sbjct:  388 KDRKLRLEDAINSTKAAVEEGIVPGGGTTLAHLGPQLASWAADNLTGEELIGATIVERALTAPLKRIAENAGQNGAVIAERVREKE-FNVGFDASVNEFTDMFAAGIVDPAKVTRSALQNAASIAGMVLTTECIISDKPEPKENAPTGAGM 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_VIBCH (60 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 65/147 (44.22%), Postives = 93/147 (63.27%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMP 440
            KEKK RVEDAL+AT+AA            L+R +SK+ ++    DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + + + YGYNAATG Y D++  GI+DPTKV R  L+ A+SVA   + ++ ++ E+ K+  PAMP
Sbjct:  390 KEKKDRVEDALHATRAAVEEGVVAGGGVALIRAASKLSSLVG--DNEEQNVGIRVALRAMEAPLRQIVKNAGDEESVVANNVRAGEGN-YGYNAATGVYGDMIEMGILDPTKVTRSALQFAASVAGLMITTEAMITELPKKDAPAMP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_RHIL3 (60 kDa chaperonin 1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 64/151 (42.38%), Postives = 94/151 (62.25%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA---MPAG 446
            KEKK R++DALNAT+AA            LLR S+K+  +K    ND+++ G +IV+RAL   ++ IA+NAG   S+V  KVL  +   +GYNA T  Y D++A GI+DP KVVR  L++A+SVA   + ++ ++ E+ + E A   MP G
Sbjct:  390 KEKKDRIDDALNATRAAVQEGIVPGGGIALLRSSTKI-TVKGA--NDDQEAGINIVRRALQSLVRQIAENAGDEASIVVGKVLDKNEDNFGYNAQTSEYGDMIAMGIVDPLKVVRTALQNAASVASLLITTEAMIAELPKKESAGGGMPGG 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURTA (60 kDa chaperonin 1 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 66/157 (42.04%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + A+  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIAAL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_ANASL (60 kDa chaperonin 1 OS=Anabaena sp. (strain L31) GN=groL1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            K+KKLR+EDA+NATKAA           TL  L+ +++A   +   DEE  GA IV RAL  PLK IA+NAG NG+V++E+V   +     +NAAT  + D+ +AGI+DP KV R  L++A S A   +++   VV+  EP+ A PAG
Sbjct:  388 KDKKLRLEDAINATKAAVEEGIVPGGGTTLAHLTPELEAWANSTLKDEELTGALIVARALPAPLKRIAENAGQNGAVIAERVKEKE-FNVDFNAATNEFVDMFSAGIVDPAKVTRSALQNALSYA-CMVLTTGTVVDKPEPKDAAPAG 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH61_MAIZE (Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=CPN60I PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 66/156 (42.31%), Postives = 89/156 (57.05%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSGY 470
            EKK RV DALNATKAA            LL  S ++D ++    N ++K+G  I++ AL  P+  IA NAGV G+VV  K+L  +N   GY+AA G Y D++  GIIDP KV+R  L  A+SV+     ++ ++VEI KE  PA   G  M    Y
Sbjct:  424 EKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLQTA--NFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQENTDLGYDAAKGEYVDMVKTGIIDPLKVIRTALVDAASVSSLMTTTESIIVEIPKEEAPAPAMGGGMGGMDY 577          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SILST (60 kDa chaperonin OS=Silicibacter sp. (strain TM1040) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 62/157 (39.49%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            L++    ++ +  T  N ++  G  IV+RAL  PL+ IA+NAGV+G+VV+ K+  S++  +G+NA T  Y D+ + G+IDP KV R  LE A+S+A   + ++ +V +    E A PAG   D  G G
Sbjct:  390 KERKDRVDDALNATRAAVQEGVIVGGGVALVQAGKSLEGL--TGVNADQNAGIAIVRRALEAPLRQIAENAGVDGAVVAGKIRESEDKNFGFNAQTEEYGDMFSFGVIDPAKVTRTALEDAASIAGLLITTEAMVADKPAKEGAAPAGGMPDMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PONAB (60 kDa heat shock protein, mitochondrial OS=Pongo abelii GN=HSPD1 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPA 443
            EKK RV DALNAT+AA          C LLR    +D++  T  N+++K+G +I+KR L  P   IAKNAGV GS++ EK++ S + + GY+A  G++ +++  GIIDPTKVVR  L  A+ VA     ++ VV EI  +E +P M A
Sbjct:  416 EKKDRVTDALNATRAAAEEGIVLGGGCALLRCIPALDSL--TPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSS-EVGYDAMVGDFVNMVGKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDPGMGA 560          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LACAC (60 kDa chaperonin OS=Lactobacillus acidophilus GN=groL PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 62/157 (39.49%), Postives = 95/157 (60.51%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE++ R+EDALN+T+AA            L+ +   +  +K   +  +E+ G +IV RAL  P++ IA+NAG +G+VV  K+ S +N + GYNAAT  +E+++ AGIIDPTKV R  L++A+S+A   L ++ VV +I E +P  P        G G
Sbjct:  388 KERRYRIEDALNSTRAAVDEGYVAGGGTALVDVEKAIKDLKG--ETSDEQTGINIVLRALSAPVRQIAENAGKDGAVVLNKLESQEN-EIGYNAATDKWENMVEAGIIDPTKVTRTALQNAASIAALLLTTEAVVADIPEDKPEAPQAGAAGAPGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_EXISA (60 kDa chaperonin OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSG 467
            KE+KLR+EDALNAT+AA           +L+ +   V A+   +  DE   G  +V RAL  P++ IA+NAG  GSV+ EK L +++   GYNAATG Y D++A GI+DP KV R  L++A+SV+  FL ++ V+ +  E + PAMP    M   G
Sbjct:  388 KERKLRIEDALNATRAAVEEGIVAGGGTSLINVIPAVRALLSEVTADEA-TGVKLVLRALEAPVRQIAENAGEEGSVIVEK-LKNESVGVGYNAATGEYVDMIAHGIVDPAKVTRSALQNAASVSAMFLTTEAVIADKPEKDAPAMPDMGGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH602_ACAM14.570e-2439.7460 kDa chaperonin 2 OS=Acaryochloris marina (strai... [more]
CH601_VIBCH4.570e-2444.2260 kDa chaperonin 1 OS=Vibrio cholerae GN=groL1 PE... [more]
CH601_RHIL34.570e-2442.3860 kDa chaperonin 1 OS=Rhizobium leguminosarum bv.... [more]
CH601_BURTA4.570e-2442.0460 kDa chaperonin 1 OS=Burkholderia thailandensis ... [more]
CH601_ANASL4.570e-2444.5960 kDa chaperonin 1 OS=Anabaena sp. (strain L31) G... [more]
CH61_MAIZE5.968e-2442.31Chaperonin CPN60-1, mitochondrial OS=Zea mays GN=C... [more]
CH60_SILST5.968e-2439.4960 kDa chaperonin OS=Silicibacter sp. (strain TM10... [more]
CH60_PONAB5.968e-2443.9260 kDa heat shock protein, mitochondrial OS=Pongo ... [more]
CH60_LACAC5.968e-2439.4960 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH60_EXISA5.968e-2442.9560 kDa chaperonin OS=Exiguobacterium sp. (strain A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
back to top