CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 65/158 (41.14%), Postives = 94/158 (59.49%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGV-NGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R +  +D ++   +N+++K G +IV+RAL  PL+ I  N G  +G+VV E+V   +   +G+NA T  YE +  AG++DPTKV R  LE+A+SVA   L ++  + +IKE    MPA  P    G G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVAGGGVALIRAAKGLDNVQP--ENEDQKTGVEIVRRALEEPLRQIVANTGTTDGAVVVERVKQGEGD-FGFNARTEEYEKMTEAGVVDPTKVTRTALENAASVAGILLTTEAAITDIKEEGGDMPAMPPGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMC1 (60 kDa chaperonin OS=Campylobacter concisus (strain 13826) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 70/155 (45.16%), Postives = 93/155 (60.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+  S  V+     L  DE  +GA+IV+RAL  PL+ IA+NAG +  VV+  V +S +  +G+NAATG Y ++  AGIIDP KV R  L++A SVA   L ++  + EIKE E AMPA   M   G
Sbjct:  389 KEKKDRVDDALSATRAAVEEGIVVGGGSALILASKSVNL---NLQGDEA-IGAEIVRRALRAPLRQIAENAGFDAGVVANAVETSKDANFGFNAATGEYVNMFEAGIIDPVKVERVALQNAVSVASLLLTTEATISEIKE-EKAMPAMPDMGGMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BARHE (60 kDa chaperonin OS=Bartonella henselae GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE---PEPAMPAG 446
            KEKK RV+DALNAT+AA            LLR ++   A+     N +++ G +IV+RAL  P + IA NAG   +++  KVL ++   +GYN ATG + DL+A GI+DP KVVR  L++A+S+A   + ++ +V E+ +   P P MP G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVAGGGTALLRAAN---ALTVKGSNPDQEAGINIVRRALQAPARQIATNAGEEAAIIVGKVLENNADTFGYNTATGEFGDLIALGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPKKDTPVPPMPGG 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ALHEH (60 kDa chaperonin OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 63/157 (40.13%), Postives = 96/157 (61.15%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            LLR  + +D ++    N +++VG +IV+RA+  PL+ I  NAG +G+VV  +V + + + YGYNA +G Y DL+  GI+DPTKV R  L++A+SVA   + ++ +V ++ + + A   G   D  G G
Sbjct:  391 KEKKARVEDALHATRAAVEEGIVPGGGTALLRAQASLDGLEYA--NHDQEVGINIVRRAMEEPLRQIVYNAGGDGAVVVNEVRNGEGN-YGYNAQSGEYGDLVEMGILDPTKVTRTALQNAASVAALMITTEVMVADLPKDDDAGAGGGMGDMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AKKM8 (60 kDa chaperonin OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=groL PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 63/157 (40.13%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL+AT+AA            L+R    +D +K  L+ DE   GA IV RA+  PL+ +A NAG  G+++   V    N   GYN AT  YEDL++AG++DPTKV R  L++A+S+A   L ++CV+ +  E +         D  G G
Sbjct:  389 KEKKARVDDALHATRAAVEEGIVPGGGVALIRAQKAIDTLK--LEGDEA-TGAQIVYRAVEAPLRQLACNAGREGALIVANVKGMKNTAEGYNVATDKYEDLLSAGVVDPTKVTRSALQNAASIAGLLLTTECVIADKPEKKSCSCGSGASDMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_SINMW (60 kDa chaperonin 2 OS=Sinorhizobium medicae (strain WSM419) GN=groL2 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 61/154 (39.61%), Postives = 95/154 (61.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 458
            KEKK RV+DAL+AT+AA            LLR+ S ++ +     ND+++VG +IV+RA+  P++ IA+NAG  GS++  K+   ++  +G+NA TG + DL   G+IDP KVVR  L+ A+SVA   + ++ ++ E   K+ +P MP    MD
Sbjct:  390 KEKKDRVDDALHATRAAVEEGILPGGGVALLRVVSVLNGLATA--NDDQRVGIEIVRRAIEAPVRQIAENAGAEGSIIVGKLREKEDFAFGWNAQTGEFGDLFQMGVIDPAKVVRAALQDAASVAGLLVTTEAMIAEKPKKDGQPQMPPAPGMD 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURCM (60 kDa chaperonin 1 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=groL1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIASL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGQGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH61_CUCMA (Chaperonin CPN60-1, mitochondrial OS=Cucurbita maxima GN=CPN60-1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMDNSGY 470
            EKK RV DALNATKAA            LL  S ++D +     N ++K+G  I++ AL  P+  IA NAGV G+VV  K+L  D+   GY+AA G Y D++ AGIIDP KV+R  L  A+SV+     ++ VVVE+ + E  +PA G  M    Y
Sbjct:  422 EKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTA--NFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEVVVVELPKDENEVPAMGGGMGGMDY 575          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_PHOPR (60 kDa chaperonin OS=Photobacterium profundum GN=groL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 67/157 (42.68%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DAL+AT+AA            L+R +SKV A     DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + + + YGYNAATG Y D++A GI+DPTKV R  L+ A+SVA   + ++ ++ ++    PA  A    D  G G
Sbjct:  390 KEKKDRVQDALHATRAAVEEGVVAGGGVALIRAASKVAASGLEGDNEEQNVGIRVALRAMESPLRQIVKNAGDEDSVVANNVRAGEGN-YGYNAATGVYGDMIAMGILDPTKVTRSALQFAASVAGLMITTEAMITDM----PAKDASAMPDMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HUMAN (60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPA 443
            EKK RV DALNAT+AA          C LLR    +D++  T  N+++K+G +I+KR L  P   IAKNAGV GS++ EK++ S + + GY+A  G++ +++  GIIDPTKVVR  L  A+ VA     ++ VV EI  +E +P M A
Sbjct:  416 EKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSL--TPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSS-EVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPKEEKDPGMGA 560          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_CHLPB5.968e-2441.1460 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_CAMC15.968e-2445.1660 kDa chaperonin OS=Campylobacter concisus (strai... [more]
CH60_BARHE5.968e-2441.0660 kDa chaperonin OS=Bartonella henselae GN=groL P... [more]
CH60_ALHEH5.968e-2440.1360 kDa chaperonin OS=Alkalilimnicola ehrlichei (st... [more]
CH60_AKKM85.968e-2440.1360 kDa chaperonin OS=Akkermansia muciniphila (stra... [more]
CH602_SINMW5.968e-2439.6160 kDa chaperonin 2 OS=Sinorhizobium medicae (stra... [more]
CH601_BURCM5.968e-2441.4060 kDa chaperonin 1 OS=Burkholderia ambifaria (str... [more]
CH61_CUCMA7.795e-2442.95Chaperonin CPN60-1, mitochondrial OS=Cucurbita max... [more]
CH60_PHOPR7.795e-2442.6860 kDa chaperonin OS=Photobacterium profundum GN=g... [more]
CH60_HUMAN7.795e-2443.9260 kDa heat shock protein, mitochondrial OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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