CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_ELUMP (60 kDa chaperonin OS=Elusimicrobium minutum (strain Pei191) GN=groL PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 64/150 (42.67%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 452
            K KK +VEDA NATKA             L R    V  +K   DN++ + G +IVK+AL  PL  IA NAG++GSVV E V ++  ++ G++A TG Y D++ AG++D  KVVR  LE+A+S+A T L+++ +V +I E + A P G+P
Sbjct:  388 KAKKAKVEDAKNATKAGVEEGLIPGGGVALTRCEGAVGKLKA--DNEDVQTGINIVKKALTAPLYQIAFNAGLDGSVVVENVRNAKGNQ-GFDADTGEYVDMIKAGVVDAVKVVRIGLENAASIAATVLLTEALVADIPEEKGAAPMGHP 534          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_SYNAS (60 kDa chaperonin 1 OS=Syntrophus aciditrophicus (strain SB) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 70/159 (44.03%), Postives = 94/159 (59.12%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSGYGY 476
            KEKK RVEDAL+AT+AA            LLR    + A+      D+E+ G +IVKRA+  P++ IA NAG  GS+V EKV  +  + +G+NA T  Y D+M AGIIDPTKVVR  L++A+SVA   L ++ ++ E  K+    MP G P D     Y
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALLRT---LPALAGMDLPDDERPGLNIVKRAVEEPMRQIAANAGFEGSIVVEKVKENTGN-FGFNADTEKYVDMMEAGIIDPTKVVRFALQNAASVASLLLTTEAMIAEAPKKKGAGMPGGMPPDMGDMEY 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRA5 (60 kDa chaperonin OS=Streptococcus agalactiae serotype V GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGY 470
            KE KLR+EDALNAT+AA            L+ +  KV A+K    N +E+ G +IV RAL  P++ IA NAG  GSV+ E++  S+    G+NAA G + D++  GIIDP KV R  L++A+SVA   L ++ VV    EPE P  PA +P    G+
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVSGGGTALVNVIEKVAALKL---NGDEETGRNIVLRALEEPVRQIAYNAGYEGSVIIERLKQSEIGT-GFNAANGEWVDMVTTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPEAPTAPAMDPSMMGGF 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRA3 (60 kDa chaperonin OS=Streptococcus agalactiae serotype III GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGY 470
            KE KLR+EDALNAT+AA            L+ +  KV A+K    N +E+ G +IV RAL  P++ IA NAG  GSV+ E++  S+    G+NAA G + D++  GIIDP KV R  L++A+SVA   L ++ VV    EPE P  PA +P    G+
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVSGGGTALVNVIEKVAALKL---NGDEETGRNIVLRALEEPVRQIAYNAGYEGSVIIERLKQSEIGT-GFNAANGEWVDMVTTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPEAPTAPAMDPSMMGGF 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_STRA1 (60 kDa chaperonin OS=Streptococcus agalactiae serotype Ia GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 68/157 (43.31%), Postives = 93/157 (59.24%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGY 470
            KE KLR+EDALNAT+AA            L+ +  KV A+K    N +E+ G +IV RAL  P++ IA NAG  GSV+ E++  S+    G+NAA G + D++  GIIDP KV R  L++A+SVA   L ++ VV    EPE P  PA +P    G+
Sbjct:  388 KEMKLRIEDALNATRAAVEEGIVSGGGTALVNVIEKVAALKL---NGDEETGRNIVLRALEEPVRQIAYNAGYEGSVIIERLKQSEIGT-GFNAANGEWVDMVTTGIIDPVKVTRSALQNAASVASLILTTEAVVANKPEPEAPTAPAMDPSMMGGF 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LYSSC (60 kDa chaperonin OS=Lysinibacillus sphaericus (strain C3-41) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 68/157 (43.31%), Postives = 98/157 (62.42%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA            LL + + V+ + E+ + D    G  IV RAL  P++ IA NAG+ GS++ ++ L  +    G+NAATG + ++M AG++DP KV R  L++A+SVA  FL ++ VV +I  PEPA  AG P D SG G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVSGGGTALLNVYAAVEKVSESEEGDVA-TGVKIVLRALEEPVRQIANNAGLEGSIIVDR-LKREEIGIGFNAATGEWVNMMEAGVVDPAKVTRSALQNAASVAALFLTTEAVVADI--PEPA-GAGMP-DMSGMG 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HAMD5 (60 kDa chaperonin OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 60/150 (40.00%), Postives = 89/150 (59.33%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVL-SSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGN 449
            KEKK RVEDAL AT+AA            L+R++SK+       DN+++ VG  +  RA+  PL+ I  NAG   SV++ KV  +  N  YGYNA T  Y D++  GI+DPTKV R  L++A+S+A   + ++C+V ++ + E A   G+
Sbjct:  390 KEKKARVEDALQATRAAVEEGVVPGGGVALIRVASKIANSSLKGDNEDQNVGIRVALRAMESPLRQIVVNAGEEASVIANKVKENKGNDNYGYNAQTEAYGDMIEMGILDPTKVTRSALQYAASIAGLMITTECMVTDLPKEEKASDMGS 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_EXIS2 (60 kDa chaperonin OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 66/157 (42.04%), Postives = 91/157 (57.96%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP--EPAMPAGNPMDNSG 467
            KE+KLR+EDALNAT+AA             + ++  V++I      DE   G +IV RAL  PL+ IA+NAG  GSV+ E+ L  +    GYNAAT  Y D++  GI+DP KV R  L++A+SV+  FL ++ V+ +  EP   PAMP    M   G
Sbjct:  388 KERKLRIEDALNATRAAVEEGIVAGGGTAFIHVTKAVESILAVTTGDEA-TGVNIVLRALEAPLRQIAENAGQEGSVIVER-LKHEAQGMGYNAATDEYVDMIETGIVDPAKVTRSALQNAASVSAMFLTTEAVIADKPEPAGAPAMPDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURVI (60 kDa chaperonin OS=Burkholderia vietnamiensis GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURMS (60 kDa chaperonin OS=Burkholderia mallei (strain SAVP1) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_ELUMP7.795e-2442.6760 kDa chaperonin OS=Elusimicrobium minutum (strai... [more]
CH601_SYNAS7.795e-2444.0360 kDa chaperonin 1 OS=Syntrophus aciditrophicus (... [more]
CH60_STRA51.018e-2343.3160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA31.018e-2343.3160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_STRA11.018e-2343.3160 kDa chaperonin OS=Streptococcus agalactiae sero... [more]
CH60_LYSSC1.018e-2343.3160 kDa chaperonin OS=Lysinibacillus sphaericus (st... [more]
CH60_HAMD51.018e-2340.0060 kDa chaperonin OS=Hamiltonella defensa subsp. A... [more]
CH60_EXIS21.018e-2342.0460 kDa chaperonin OS=Exiguobacterium sibiricum (st... [more]
CH60_BURVI1.018e-2341.4060 kDa chaperonin OS=Burkholderia vietnamiensis GN... [more]
CH60_BURMS1.018e-2341.4060 kDa chaperonin OS=Burkholderia mallei (strain S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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