CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURMA (60 kDa chaperonin OS=Burkholderia mallei GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURM9 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10229) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURM7 (60 kDa chaperonin OS=Burkholderia mallei (strain NCTC 10247) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BURCE (60 kDa chaperonin OS=Burkholderia cepacia GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACWK (60 kDa chaperonin OS=Bacillus weihenstephanensis (strain KBAB4) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++ +GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLESGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACCR (60 kDa chaperonin OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++ +GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLESGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACC4 (60 kDa chaperonin OS=Bacillus cereus (strain B4264) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++ +GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLESGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACC2 (60 kDa chaperonin OS=Bacillus cereus (strain G9842) GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 67/158 (42.41%), Postives = 97/158 (61.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++ +GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLESGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AMOPS (60 kDa chaperonin OS=Amoeba proteus symbiotic bacterium GN=groL PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 60/155 (38.71%), Postives = 91/155 (58.71%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R    +D +K   DN ++ +G +I++RA+  PL+ I  NAG   SV+  KV    ++ +G+NAATG Y D++  GI+DPTKV R  L++A+SV    L ++C+V ++ + +  M     M   G
Sbjct:  389 KEKKARVEDALHATRAAVEEGIVAGGGVALIRAQKVLDGLKG--DNADQDMGINILRRAIESPLRQIVANAGYESSVIVNKVAEHKDN-FGFNAATGQYGDMVEMGILDPTKVTRTALQNAASVRSLMLTTECMVADLPKKDEGMAGAGDMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_VIBVY (60 kDa chaperonin 1 OS=Vibrio vulnificus (strain YJ016) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SVA   + ++ +V ++ + +  MP    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKIVDLQG--DNEEQNVGIRVALRAMEAPLRQITKNAGDEESVVANNVRAGEG-SYGYNAATGVYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKDSGMPDMGGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_BURMA1.018e-2341.4060 kDa chaperonin OS=Burkholderia mallei GN=groL P... [more]
CH60_BURM91.018e-2341.4060 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURM71.018e-2341.4060 kDa chaperonin OS=Burkholderia mallei (strain N... [more]
CH60_BURCE1.018e-2341.4060 kDa chaperonin OS=Burkholderia cepacia GN=groL ... [more]
CH60_BACWK1.018e-2342.4160 kDa chaperonin OS=Bacillus weihenstephanensis (... [more]
CH60_BACCR1.018e-2342.4160 kDa chaperonin OS=Bacillus cereus (strain ATCC ... [more]
CH60_BACC41.018e-2342.4160 kDa chaperonin OS=Bacillus cereus (strain B4264... [more]
CH60_BACC21.018e-2342.4160 kDa chaperonin OS=Bacillus cereus (strain G9842... [more]
CH60_AMOPS1.018e-2338.7160 kDa chaperonin OS=Amoeba proteus symbiotic bact... [more]
CH601_VIBVY1.018e-2341.2960 kDa chaperonin 1 OS=Vibrio vulnificus (strain Y... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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