CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_VIBVU (60 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 64/155 (41.29%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R +SK+  ++   DN+E+ VG  +  RA+  PL+ I KNAG   SVV+  V + +   YGYNAATG Y D++  GI+DPTKV R  L+ A+SVA   + ++ +V ++ + +  MP    M   G
Sbjct:  390 KEKKDRVEDALHATRAAVEEGIVAGGGVALIRAASKIVDLQG--DNEEQNVGIRVALRAMEAPLRQITKNAGDEESVVANNVRAGEG-SYGYNAATGVYGDMLEMGILDPTKVTRSALQFAASVAGLMITTEAMVTDLPQKDSGMPDMGGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_PROM1 (60 kDa chaperonin 1 OS=Prochlorococcus marinus (strain NATL1A) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEP--EPAMPAGNPMDNSG 467
            K +KLR+EDALNAT+AA           TLL LS  +  + + L+ D+ K G +I+KRAL  P K IA NAG NG VV   +        G+NA TG Y DL+ AGI+D +KV+R  L+ A S+A   + ++ V+ +  EP   P    G+PM   G
Sbjct:  388 KNRKLRIEDALNATRAAIEEGIVAGGGTTLLELSEGLGDLAKKLEGDQ-KTGVEIIKRALTAPTKQIAINAGFNGDVVVSDIKRLGK---GFNAQTGEYVDLLEAGILDASKVIRLALQDAVSIASLLITTEVVIADKPEPPSAPGAEGGDPMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_CHLCV (60 kDa chaperonin 1 OS=Chlamydophila caviae GN=groL1 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 67/156 (42.95%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE----PAMPAGNPMD 458
            KEKK RV+DA +AT AA            L+R    ++A    L N++E++GA IV +AL  PLK IA NAG  G+++ ++VLS  + + GY+A    Y D++ AGI+DPTKV RC LE A+SVA   L ++ ++ +I E +    PAMP G  MD
Sbjct:  390 KEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLSRSSSE-GYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEALIADIPEEKSSSAPAMP-GAGMD 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURVG (60 kDa chaperonin 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURP1 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1710b) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURP0 (60 kDa chaperonin 1 OS=Burkholderia pseudomallei (strain 1106a) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 89/157 (56.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + + ++  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVPGGGVALIRARTAIASL--TGVNADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURCH (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain HI2424) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH601_BURCA (60 kDa chaperonin 1 OS=Burkholderia cenocepacia (strain AU 1054) GN=groL1 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.018e-23
Identity = 65/157 (41.40%), Postives = 88/157 (56.05%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R  + +  +  T  N ++  G  IV RA+  PL+ I  N G   SVV   V +   + YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGIVAGGGVALIRARTAIAGL--TGANADQNAGIKIVLRAMEEPLRQIVTNGGEEASVVVAAVAAGKGN-YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_UNCTG (60 kDa chaperonin OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 59/151 (39.07%), Postives = 89/151 (58.94%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            K KK +VEDALNAT+A             LL+  + ++ I     + +EK G +IV +AL  P+++I +NAG+  SVV +KV +S +  +GY+A    Y D++ AGI+DP KV R  LE+A+S+A   L ++ +V +I E  P  P G  M
Sbjct:  388 KTKKFKVEDALNATRAGVEEGIVAGGGVALLKTQTVLEKINAA--DSDEKTGIEIVLKALEGPIRMIIENAGLEASVVVDKVKNSKDTAFGYDADNNEYVDMIKAGIVDPAKVTRTALENAASIASLILTTETLVTDIPEKSPKFPGGGGM 536          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_SHEPA (60 kDa chaperonin OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 64/155 (41.29%), Postives = 90/155 (58.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R++SK+  +   + N+++K G  I  RA+  PL+ IA NAG  GSVV+  V +   + YGYNA    Y D++  GI+DPTKV R  L+ ASS+A   + ++C+V E+KE    M     M   G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALVRVASKIGELD--VINEDQKHGVIIALRAMEAPLRQIAANAGEEGSVVANNVKNGTGN-YGYNAGNDTYGDMLEMGILDPTKVTRSALQFASSIAGLMITTECMVAEVKEDAADMGGMGGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH601_VIBVU1.018e-2341.2960 kDa chaperonin 1 OS=Vibrio vulnificus GN=groL1 ... [more]
CH601_PROM11.018e-2341.4060 kDa chaperonin 1 OS=Prochlorococcus marinus (st... [more]
CH601_CHLCV1.018e-2342.9560 kDa chaperonin 1 OS=Chlamydophila caviae GN=gro... [more]
CH601_BURVG1.018e-2341.4060 kDa chaperonin 1 OS=Burkholderia vietnamiensis ... [more]
CH601_BURP11.018e-2341.4060 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURP01.018e-2341.4060 kDa chaperonin 1 OS=Burkholderia pseudomallei (... [more]
CH601_BURCH1.018e-2341.4060 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH601_BURCA1.018e-2341.4060 kDa chaperonin 1 OS=Burkholderia cenocepacia (s... [more]
CH60_UNCTG1.330e-2339.0760 kDa chaperonin OS=Uncultured termite group 1 ba... [more]
CH60_SHEPA1.330e-2341.2960 kDa chaperonin OS=Shewanella pealeana (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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