CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_LEGMI (60 kDa chaperonin OS=Legionella micdadei GN=groL PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 61/156 (39.10%), Postives = 94/156 (60.26%), Query Frame = 3
Query:    6 EKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            ++K RVEDAL+AT+AA            L+R    +D +K   +N ++ +G +I++RA+  PL+ I  NAG   SV+  KV  S ++ +G+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  M AG      G G
Sbjct:  388 KRKARVEDALHATRAAVEEGIVAGGGVALIRAQKALDGLKG--ENADQDMGINILRRAIESPLRQIVANAGYEPSVIVNKVAESKDN-FGFNAATGEYGDMVEMGILDPTKVTRTALQNAASVASLMLTTECMVADLPKKEEPMGAGEMGGMGGMG 540          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 61/147 (41.50%), Postives = 90/147 (61.22%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 443
            KEKK RVEDAL+AT+AA             +R  + +D++       E++ G  I+K +L  P++ IA NAG++ S+V +KV  +    +GYNAA   Y D++ AGIIDPTKV RC L++ASSVA   L ++C++ E  + +  MPA
Sbjct:  390 KEKKARVEDALHATRAAVDEGIVPGGGVAYIRALNALDSVVLPA---EQQFGVTIIKSSLEAPIRQIADNAGIDASIVVDKV-KNGKEAFGYNAADDTYVDMLEAGIIDPTKVSRCALQNASSVAGLMLTTECMIAEKPKKDSGMPA 532          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FLAJ1 (60 kDa chaperonin OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 67/153 (43.79%), Postives = 88/153 (57.52%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEP--AMPAGNPM 455
            KEKK RV+DAL+AT+AA            LLR    +  +K   DN +E  G  IV RA+  PL+ I +NAG+ GSVV  KV       +GYNA T  Y D++ AGIIDP KV R  LE+A+SV+   L ++C +++IKE      MP G  M
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVAGGGVALLRAKLALADLKA--DNADEATGIQIVSRAIEAPLRTIVENAGLEGSVVVAKVAEGSGD-FGYNAKTDEYVDMLKAGIIDPKKVTRVALENAASVSGMILTTECALIDIKEENAGGGMPMGGGM 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DEIRA (60 kDa chaperonin OS=Deinococcus radiodurans GN=groL PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 70/159 (44.03%), Postives = 92/159 (57.86%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNY-EDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKE-PEPAMPAGNPMDNSGYG 473
            KEKK R EDAL+  ++A           TLLR+   V    E+L  DE   GA I+ RAL  P + IA NAG  GSV+   V+ SD  +YG+NAATG Y ED++AAGI+DP KV R  L++A+S+    L ++ +V +  E   PAMP G   D  G G
Sbjct:  388 KEKKHRYEDALSTARSAVEEGIVAGGGTTLLRVIPAVRKAAESLTGDEA-TGARILIRALEEPARQIAANAGEEGSVIVNAVVGSDKARYGFNAATGEYVEDMVAAGIVDPAKVTRTALQNAASIGALILTTEAIVSDKPEKAAPAMPQGGG-DMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CLOB6 (60 kDa chaperonin OS=Clostridium botulinum (strain 657 / Type Ba4) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 66/154 (42.86%), Postives = 93/154 (60.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMD 458
            KE+KLR+EDAL ATKAA             + +  K+  +  T D  + K+G DI+++AL  P++ IA NAGV GSV+ EKV +S+    GY+A    Y D++  GI+DPTKV R  L++A+S+A TFL ++  V +I E E  P M  G  MD
Sbjct:  388 KEEKLRIEDALAATKAAVEEGIVPGGGTAYIDIIPKIADL--TSDIIDVKLGIDIIRKALEEPVRQIANNAGVEGSVIIEKVKASEAG-VGYDALNDKYVDMLKTGIVDPTKVTRSALQNAASIASTFLTTEAAVADIPEKENTPPMAPGMGMD 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLFF (60 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 66/156 (42.31%), Postives = 96/156 (61.54%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE----PAMPAGNPMD 458
            KEKK RV+DA +AT AA            L+R    ++A    L N++E++GA IV +AL  PLK IA NAG  G+++ ++VL+  +++ GY+A    Y D++ AGI+DPTKV RC LE A+SVA   L ++ ++ +I E +    PAMP G  MD
Sbjct:  390 KEKKDRVDDAQHATLAAVEEGILPGGGTALVRCIPTLEAFIPILTNEDEQIGARIVLKALSAPLKQIAANAGKEGAIICQQVLARSSNE-GYDALRDAYTDMIEAGILDPTKVTRCALESAASVAGLLLTTEALIADIPEDKSSSAPAMP-GAGMD 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BLOFL (60 kDa chaperonin OS=Blochmannia floridanus GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSGYG 473
            KEKK RVEDAL+AT+AA            L+R+++ +  +    DN+++ VG  + +RA+  PL+ I  NAG   SV++  V S + +  GYNAAT  Y +++  GI+DPTKV R  L++A+S+A   + ++C+V E+ KE +P +  GNP    G G
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALIRVANAIRNLCG--DNEDQNVGIKVARRAMEAPLRQIMANAGEEPSVIANNVRSGEGNT-GYNAATEKYGNMIELGILDPTKVTRSALQYAASIAGLMITTECMVTELPKEDKPDLGGGNPGGAGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACHK (60 kDa chaperonin OS=Bacillus thuringiensis subsp. konkukian GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++  GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLETGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACCZ (60 kDa chaperonin OS=Bacillus cereus (strain ZK / E33L) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++  GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLETGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_BACCQ (60 kDa chaperonin OS=Bacillus cereus (strain Q1) GN=groL PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 67/158 (42.41%), Postives = 96/158 (60.76%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE-PAMPAGNPMDNSGYG 473
            KE+KLR+EDALN+T+AA           +L+ + +KV +I   +   +E  G +IV RAL  P++ IA NAG+ GSVV E+ L  +    G+NAATG + +++  GI+DP KV R  L++A+SVA  FL ++ VV +  EP  PAMP    M   G G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTSLMNVYTKVASI---VAEGDEATGINIVLRALEEPVRQIAINAGLEGSVVVER-LKGEKVGVGFNAATGEWVNMLETGIVDPAKVTRSALQNAASVAAMFLTTEAVVADKPEPNAPAMPDMGGMGMGGMG 541          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_LEGMI1.330e-2339.1060 kDa chaperonin OS=Legionella micdadei GN=groL P... [more]
CH60_GEOLS1.330e-2341.5060 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH60_FLAJ11.330e-2343.7960 kDa chaperonin OS=Flavobacterium johnsoniae (st... [more]
CH60_DEIRA1.330e-2344.0360 kDa chaperonin OS=Deinococcus radiodurans GN=gr... [more]
CH60_CLOB61.330e-2342.8660 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CHLFF1.330e-2342.3160 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH60_BLOFL1.330e-2339.2460 kDa chaperonin OS=Blochmannia floridanus GN=gro... [more]
CH60_BACHK1.330e-2342.4160 kDa chaperonin OS=Bacillus thuringiensis subsp.... [more]
CH60_BACCZ1.330e-2342.4160 kDa chaperonin OS=Bacillus cereus (strain ZK / ... [more]
CH60_BACCQ1.330e-2342.4160 kDa chaperonin OS=Bacillus cereus (strain Q1) G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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