CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RUTMC (60 kDa chaperonin OS=Ruthia magnifica subsp. Calyptogena magnifica GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 60/155 (38.71%), Postives = 90/155 (58.06%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R+   +D +  T DN ++ +G DI KRA+  PL+ I  N G   SV+  +V    ++ YGYNAAT  Y D++  GI+DPTKVVR  L+HA+S++   + ++ ++ +  +  PA  A   M   G
Sbjct:  390 KEKKGRVDDALHATRAAVEEGVVPGGGVALVRVIKALDGL--TGDNHDQNIGIDIAKRAMEAPLRQIVTNGGGEASVILNEVAKGKDN-YGYNAATEKYGDMLKMGILDPTKVVRAALQHAASISGLMITTEAMITDTPQDTPATAAAPDMGGMG 541          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_MACCJ (60 kDa chaperonin OS=Macrococcus caseolyticus (strain JCSC5402) GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAG 446
            KE+KLR+EDALN+T+AA            L+ + +KV A++ T D      G  IV +AL  P++ IA+NAG+ GSV+ EK+  ++    GYNAAT  + +++ AGI+DPTKV R  L++A+SVA  FL ++ VV E+ E  P    G
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAAVEATGD---VATGVKIVLKALEAPIRQIAENAGLEGSVIVEKIKHAETG-VGYNAATDEWVNMIDAGIVDPTKVTRSALQNAASVAAMFLTTEAVVAEMPEENPTPDMG 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_GEOSW (60 kDa chaperonin OS=Geobacillus sp. (strain WCH70) GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 66/150 (44.00%), Postives = 93/150 (62.00%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV----EIKEPEPAMP 440
            KE+KLR+EDALN+T+AA            L+ + +KV AI+   D   E  G  IV RA+  P++ IA+NAG+ GSV+ E+ L ++    G+NAATG + D++ AGI+DPTKV R  L++A+SVA  FL ++ VV     E K   P MP
Sbjct:  388 KERKLRIEDALNSTRAAVEEGIVAGGGTALMNVYNKVAAIEAEGD---EATGVKIVLRAIEEPVRQIAQNAGLEGSVIVER-LKTEKPGIGFNAATGEWVDMIEAGIVDPTKVTRSALQNAASVAAMFLTTEAVVADKPEENKGGNPGMP 533          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_DINSH (60 kDa chaperonin OS=Dinoroseobacter shibae (strain DFL 12) GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 60/157 (38.22%), Postives = 94/157 (59.87%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KE+K RV+DALNAT+AA            L++ +  +D ++    N+++ +G +IV++AL  PL+ IA+NAGV+GSVV+ K+  S +  +G+NA T  Y D+   G+IDP KVVR  L+ A+S+A   + ++ +V +    E A   G   D  G G
Sbjct:  390 KERKDRVDDALNATRAAVQEGIVVGGGVALIQAAKHLDGLEGA--NNDQNIGINIVRKALEAPLRQIAENAGVDGSVVAGKIRESSDLAFGFNAQTEEYGDMFKFGVIDPAKVVRTALQDAASIAGLLITTEAMVADKPAKEGAGAGGGMPDMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CARHZ (60 kDa chaperonin OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 66/152 (43.42%), Postives = 92/152 (60.53%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMD 458
            KEKKLR+EDALNAT+AA           T + +   ++ +++T   DE + G  IV++AL  PLK IA NAG+ GSV+ EKV +     +G+NA T  Y D++AAGI+DP KV R  L++A+SVA   L ++ +V E  E E   P    MD
Sbjct:  389 KEKKLRIEDALNATRAAVEEGIVAGGGTTYIHIIKALEELEKTATGDE-RTGIAIVRKALEEPLKQIAINAGLEGSVIVEKVKTLPVG-HGFNALTEEYVDMIAAGIVDPAKVTRSALQNAASVAAMLLTTEALVAEKPEKEKKGPDMPNMD 538          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AERSA (60 kDa chaperonin OS=Aeromonas salmonicida GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R+++K+  ++   DN+++ VG  +  RA+  PL+ I  NAG   SV++  V + + + +GYNA T  Y D++A GI+DPTKV R  L+ ASS+A   + ++C++ E+ K+  PAMP    M   G
Sbjct:  390 KEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLRG--DNEDQNVGIKVALRAMEAPLRQIVINAGEEASVIANAVKNGEGN-FGYNAYTEQYGDMLAMGILDPTKVTRSALQFASSIAGLMITTECMITELPKKDTPAMPDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_AERS4 (60 kDa chaperonin OS=Aeromonas salmonicida (strain A449) GN=groL PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 61/156 (39.10%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R+++K+  ++   DN+++ VG  +  RA+  PL+ I  NAG   SV++  V + + + +GYNA T  Y D++A GI+DPTKV R  L+ ASS+A   + ++C++ E+ K+  PAMP    M   G
Sbjct:  390 KEKKARVDDALHATRAAVEEGVVAGGGVALVRVAAKLAGLRG--DNEDQNVGIKVALRAMEAPLRQIVINAGEEASVIANAVKNGEGN-FGYNAYTEQYGDMLAMGILDPTKVTRSALQFASSIAGLMITTECMITELPKKDTPAMPDMGGMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURTA (60 kDa chaperonin 2 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=groL2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 67/151 (44.37%), Postives = 90/151 (59.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNP 452
            KEKK RV+DAL+AT+AA            L+R+   +  +  T  N ++K G +IV RAL  PL+ I  NAG   SVV   V +   + YGYNAATG Y DL+ +G++DPTKV R  L++A+S+A   L +D  V E  K+  PA PAG P
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAEL--TGANVDQKAGINIVLRALEEPLRQIVANAGEEASVVVATVAAGSGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPAQPAGVP 537          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURP6 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 668) GN=groL2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R+   + A+     N ++K G  IV RAL  PL+ I  NAG   SVV   V +   + YGYNAATG Y DL+ +G++DPTKV R  L++A+S+A   L +D  V E  K+  P  PAG P   +G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAALAGA--NADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPTAPAGVPGAGAG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH602_BURP0 (60 kDa chaperonin 2 OS=Burkholderia pseudomallei (strain 1106a) GN=groL2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.268e-23
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+AT+AA            L+R+   + A+     N ++K G  IV RAL  PL+ I  NAG   SVV   V +   + YGYNAATG Y DL+ +G++DPTKV R  L++A+S+A   L +D  V E  K+  P  PAG P   +G
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIVPGGGVALIRVKQAIAALAGA--NADQKAGISIVLRALEEPLRQIVANAGEEASVVVATVAAGQGN-YGYNAATGEYGDLVESGVLDPTKVTRTALQNAASIAGLLLTTDATVHEAPKDAPPTAPAGVPGAGAG 542          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RUTMC2.268e-2338.7160 kDa chaperonin OS=Ruthia magnifica subsp. Calyp... [more]
CH60_MACCJ2.268e-2342.5760 kDa chaperonin OS=Macrococcus caseolyticus (str... [more]
CH60_GEOSW2.268e-2344.0060 kDa chaperonin OS=Geobacillus sp. (strain WCH70... [more]
CH60_DINSH2.268e-2338.2260 kDa chaperonin OS=Dinoroseobacter shibae (strai... [more]
CH60_CARHZ2.268e-2343.4260 kDa chaperonin OS=Carboxydothermus hydrogenofor... [more]
CH60_AERSA2.268e-2339.1060 kDa chaperonin OS=Aeromonas salmonicida GN=groL... [more]
CH60_AERS42.268e-2339.1060 kDa chaperonin OS=Aeromonas salmonicida (strain... [more]
CH602_BURTA2.268e-2344.3760 kDa chaperonin 2 OS=Burkholderia thailandensis ... [more]
CH602_BURP62.268e-2342.9560 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]
CH602_BURP02.268e-2342.9560 kDa chaperonin 2 OS=Burkholderia pseudomallei (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
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