CF835719

Overview
NameCF835719
Unique NameCF835719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RICTY (60 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV-EIKEPEPAMPAGNPMDNSG 467
            KE+K RVEDAL AT+AA           TLL  S  +  +K  ++N +++ G +IV  AL  PLK I KNAG NG VV  K+L  ++  YG+NA    Y D++ AGIIDP KVVR  L+ A+SVA   + ++ ++V E  + E  MP    M   G
Sbjct:  390 KERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLK--VENKDQQAGIEIVIEALKDPLKQIVKNAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEEPMPMRGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_RICPR (60 kDa chaperonin OS=Rickettsia prowazekii GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVV-EIKEPEPAMPAGNPMDNSG 467
            KE+K RVEDAL AT+AA           TLL  S  +  +K  ++N +++ G +IV  AL  PLK I KNAG NG VV  K+L  ++  YG+NA    Y D++ AGIIDP KVVR  L+ A+SVA   + ++ ++V E  + E  MP    M   G
Sbjct:  390 KERKDRVEDALAATRAAVEEGVVAGGGVTLLHASQTLTKLK--VENKDQQAGIEIVIEALKDPLKQIVKNAGENGGVVVGKLLEHNDKNYGFNAQDMQYVDMIKAGIIDPAKVVRTALQDAASVASLIITTETLIVDEPSDKEEPMPMRGGMGGMG 543          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_NITEC (60 kDa chaperonin OS=Nitrosomonas eutropha (strain C91) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 69/149 (46.31%), Postives = 84/149 (56.38%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 446
            KEKK RVEDA +AT+AA            LLR    V   K   DN ++  G  IV RAL  PL+ I  N G   SVV  KV     + +GYNAATG Y DL+A G++DPTKV R  L++ASSVA   L +D +V E+ KE  P   AG
Sbjct:  390 KEKKARVEDAFHATRAAVEEGIVPGGGVALLRTIDAVSKAKG--DNHDQDSGIKIVLRALEEPLRQIVTNCGDEASVVVNKVKEGKGN-FGYNAATGEYGDLVAMGVLDPTKVTRSALQNASSVAGLILTTDAMVAELPKEDSPGAGAG 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_MARMM (60 kDa chaperonin OS=Maricaulis maris (strain MCS10) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 64/157 (40.76%), Postives = 92/157 (58.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 473
            KEKK RV+DALNAT+AA            LL+ S+K+  ++   DN ++  G  IV RAL  P++ IA N+GV GS+V  KV+ + +  +G+NA T  Y D++A G+IDP KVVR  L+ A+SVA   + ++  V +  + E A   G   D  G G
Sbjct:  390 KEKKDRVDDALNATRAAVEEGIVPGGGVALLKASAKLAGLEG--DNADQTQGIAIVARALQSPIRQIATNSGVEGSIVVGKVMENPSATFGFNAQTEEYGDMLAFGVIDPAKVVRTALQDAASVASLLITTEAAVADAPKEEGA--GGGMPDMGGMG 542          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_HAEPS (60 kDa chaperonin OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 63/145 (43.45%), Postives = 88/145 (60.69%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKV-DAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 434
            KEKK RV+DAL+AT+AA            L+R +SKV D +K   DN+E+ VG  +  RA+  PL+ I  NAG   SVV+  V    N  YGYNAAT  Y D++  GI+DPTKV R  L+ A+S+A   + ++C+V ++ + E A
Sbjct:  390 KEKKDRVDDALHATRAAVEEGIIAGGGVALVRAASKVADVVKG--DNEEQNVGIRLALRAMEAPLRQIVTNAGEEASVVARNV-KDGNGNYGYNAATEQYGDMLEMGILDPTKVTRSALQFAASIAGLMITTECMVTDLPKEEKA 531          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_FERNB (60 kDa chaperonin OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 64/151 (42.38%), Postives = 90/151 (59.60%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 455
            KEKK R+EDAL+AT+AA           TLLR    ++ +   L  DE K+GA IV  AL  P++ IA NAG +G+++   VLS D+  YG++A  G Y ++   GIIDP KV R  L++A+S+A   L ++ +VVE  +PE   PA   M
Sbjct:  388 KEKKHRIEDALSATRAAVEEGIVPGGGITLLRARKVLEPVLNELTGDE-KLGAQIVYNALEAPIRQIALNAGYDGAIIIHNVLSKDDVAYGFDALKGEYCNMYERGIIDPAKVTRSALQNAASIAGMLLTTEVLVVE--KPEEKKPAAPEM 535          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_EDWI9 (60 kDa chaperonin OS=Edwardsiella ictaluri (strain 93-146) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 61/144 (42.36%), Postives = 90/144 (62.50%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA 434
            KEKK RVEDAL+AT+AA            L+R+++K+  +K    N+E+ VG  +  RA+  PL+ I  NAG   SVV+  V + + + YGYNAAT  Y D++  GI+DPTKV R  L++ASSVA   + ++C+V ++ + E A
Sbjct:  390 KEKKARVEDALHATRAAVEEGVVAGGGVALVRVAAKLVDLKGI--NEEQNVGIKVALRAMESPLRQIVANAGEEPSVVTNNVKAGEGN-YGYNAATEQYGDMIEMGILDPTKVTRSALQYASSVAGLMITTECMVTDLPKEEKA 530          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CHLT3 (60 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 66/158 (41.77%), Postives = 97/158 (61.39%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAG-VNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAGNPMDNSG 467
            KEKK RVEDAL+AT+AA            L+R  + ++ ++  ++N+++K G +I++RAL  PL+ I  N G V+GSVV  KV    +  +G+NA T  +E+++AAG+IDPT V R  LE+A+SVA   L ++ V+ E  E E  P MP G  M   G
Sbjct:  390 KEKKARVEDALHATRAAVQEGIVAGGGVALIRAVTGLENVQ--VENEDQKTGLEIIRRALEEPLRQIVANTGTVDGSVVVMKVKEGKDD-FGFNARTETFENMIAAGVIDPTMVTRTALENAASVAGLLLTTEAVISEKPEDEKMPPMPPGGGMGGMG 544          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMJD (60 kDa chaperonin OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+ATKAA            L++  +K   IK  L  DE  +GA IV+RAL  PL+ IA+NAG +  VV   V ++ +   G++AA G Y +++ +GIIDP KV R  L +A SVA   L ++  + EIKE +PAMP  + M   G
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAK---IKLDLQGDEA-IGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPAMPDMSGMGGMG 539          
BLAST of CF835719 vs. ExPASy Swiss-Prot
Match: CH60_CAMJ8 (60 kDa chaperonin OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=groL PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 67/155 (43.23%), Postives = 92/155 (59.35%), Query Frame = 3
Query:    3 KEKKLRVEDALNATKAAXXXXXXXXXXCTLLRLSSKVDAIKETLDNDEEKVGADIVKRALCYPLKLIAKNAGVNGSVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 467
            KEKK RV+DAL+ATKAA            L++  +K   IK  L  DE  +GA IV+RAL  PL+ IA+NAG +  VV   V ++ +   G++AA G Y +++ +GIIDP KV R  L +A SVA   L ++  + EIKE +PAMP  + M   G
Sbjct:  389 KEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAK---IKLDLQGDEA-IGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPAMPDMSGMGGMG 539          
The following BLAST results are available for this feature:
BLAST of CF835719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_RICTY5.052e-2342.3160 kDa chaperonin OS=Rickettsia typhi GN=groL PE=3... [more]
CH60_RICPR5.052e-2342.3160 kDa chaperonin OS=Rickettsia prowazekii GN=groL... [more]
CH60_NITEC5.052e-2346.3160 kDa chaperonin OS=Nitrosomonas eutropha (strain... [more]
CH60_MARMM5.052e-2340.7660 kDa chaperonin OS=Maricaulis maris (strain MCS1... [more]
CH60_HAEPS5.052e-2343.4560 kDa chaperonin OS=Haemophilus parasuis serovar ... [more]
CH60_FERNB5.052e-2342.3860 kDa chaperonin OS=Fervidobacterium nodosum (str... [more]
CH60_EDWI95.052e-2342.3660 kDa chaperonin OS=Edwardsiella ictaluri (strain... [more]
CH60_CHLT35.052e-2341.7760 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH60_CAMJD5.052e-2343.2360 kDa chaperonin OS=Campylobacter jejuni subsp. d... [more]
CH60_CAMJ85.052e-2343.2360 kDa chaperonin OS=Campylobacter jejuni subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01M06_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835719 ID=CF835719; Name=CF835719; organism=Citrus sinensis; type=EST; length=767bp
TTAAAGAGAAGAAGTTGAGAGTCGAAGATGCTCTTAATGCAACAAAGGCT
GCAGTTGAGGAAGGTATCGTAGTTGGTGGCGGATGTACTCTACTGAGACT
CTCATCTAAGGTGGATGCCATTAAGGAAACCCTTGATAATGATGAAGAAA
AGGTTGGAGCAGATATTGTTAAAAGAGCTCTGTGCTACCCACTGAAATTA
ATTGCCAAAAATGCCGGTGTTAATGGAAGTGTGGTCAGCGAGAAGGTGCT
TTCAAGTGACAATCATAAATATGGATACAATGCTGCAACTGGAAACTACG
AAGATCTAATGGCTGCAGGAATTATTGATCCTACCAAGGTGGTTAGATGT
TGCTTGGAGCATGCTTCCTCGGTGGCAAAAACCTTCTTGATGTCCGACTG
TGTGGTGGTTGAGATCAAGGAGCCTGAACCCGCTATGCCTGCGGGTAACC
CTATGGACAACTCAGGATATGGATACTAAGCTAATTAACAAGGTCACGGG
AGGCAAGCAAATAAGGTTCTGACTTCGTTATAGCAACTATCTTTCAGTTT
GACAGCGTTGGGTTCTCTTCTTCTTGTAAATTCAATTACTCGACTTAGTA
GAGTTTATGGATTCTGGTGAGGATAGCTTGCCAGAGTACGGCTCGTATTA
ATTTGCAATTAGATGTACAATTGCAATGATTTTGAACTTTTTGAGTGAAA
GAAATTTTATTTTGCTCATCTCCTTCACAGTCTGATACTAATTCTGCGGG
TACTCACATTTGTTACT
back to top