CF835733

Overview
NameCF835733
Unique NameCF835733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 104/123 (84.55%), Postives = 112/123 (91.06%), Query Frame = -1 
Query:  251 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNEGED 619
            KDV  AVA IKTKR +QFVDWCPTGFKCGINYQ P+VVPGGDLA+VQRA+CMISN TA+AEVFSRIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+ V DD   E+
Sbjct:  326 KDVTAAVAVIKTKRTIQFVDWCPTGFKCGINYQAPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETVGDDEAEEE 448
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 103/127 (81.10%), Postives = 115/127 (90.55%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVDDDNE---GEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D V+ + E   GE+Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSVEGEGEEEGGEEY 452
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1_PARLI (Tubulin alpha-1 chain OS=Paracentrotus lividus PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/127 (80.31%), Postives = 115/127 (90.55%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGVD---DDNEGEDY 619
            KDVN A+ATIKTKR +QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG D  D   ++ EG++Y
Sbjct:  326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSADAEGEEEEGDEY 452
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
[Close]
BLAST of CF835733 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.108e-57
Identity = 102/126 (80.95%), Postives = 116/126 (92.06%), Query Frame = -1 
Query:  248 KDVNTAVATIKTKRAVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGADGV--DDDNEGEDY 619
            KDVN A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG D V  + + EGE+Y
Sbjct:  326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY 451
The following BLAST results are available for this feature:
BLAST of CF835733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 376
Match NameE-valueIdentityDescription
TBAN_PHYPO2.108e-5784.55Tubulin alpha-1B chain OS=Physarum polycephalum GN... [more]
TBA2_PATVU2.108e-5781.10Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA1_PARLI2.108e-5780.31Tubulin alpha-1 chain OS=Paracentrotus lividus PE=... [more]
TBA1B_RAT2.108e-5780.95Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG2.108e-5780.95Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_MOUSE2.108e-5780.95Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN2.108e-5780.95Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA2.108e-5780.95Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]
TBA1B_HUMAN2.108e-5780.95Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR2.108e-5780.95Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01M14_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835733 ID=CF835733; Name=CF835733; organism=Citrus sinensis; type=EST; length=619bp
TTTTTGGGCGCACAAGGAAGTGATTTTATTAGACAGTGAGATGCCTCATT
TCTGAGAATGAGGACTGTTGATTCTCACACTGTTCTTCTAAAACCAACAT
AATTACAAAGCCATACAACAACACAGAGGCACTTTAGAAGATCAATAGAA
TGGATAGGAATTCAGACAATACATAGCTGGAGAAAAAATATGGGAGATGA
GATAGGATAAAGAAACAGTTGCTGCTACCCTGTCAAGATTATTTTCAGTA
ATCTTCTCCCTCATTGTCATCATCAACACCGTCTGCCCCAACTTCCTCAT
AGTCTTTCTCAAGAGCAGCAAGGTCTTCTCGAGCTTCTGAGAATTCACCT
TCCTCCATGCCCTCACCTACATACCAGTGAACAAATGCTCGCTTGGAATA
CATGAGATCAAATTTATGGTCAATTCGGGAGAAAACCTCAGCCACGGCTG
TGTTGTTGCTTATCATACAAACTGCACGTTGAACTCTAGCAAGATCACCC
CCTGGTACCACTGTCGGTGGCTGGTAGTTGATACCACATTTGAAACCAGT
TGGACACCAATCAACAAACTGAACTGCCCGCTTCGTCTTGATGGTGGCAA
CCGCAGTATTGACATCCTT
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