CF835762

Overview
NameCF835762
Unique NameCF835762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length764
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.513e-101
Identity = 167/248 (67.34%), Postives = 205/248 (82.66%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 747
            MG  IR QRKGAG +F SH  HRKG ++ R LD+ ER+GY+KG+V +IIHDPGRGAPLA + FR P++Y   K   +AAEGM+TGQF++CG KA + +GN++PV ++PEG  +CNVE+  GDRGV+ARASG+YA +I+HNPD   TR++LPSGAKK++ S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGGGNHQHIGH STVRRDA  G+KVGLIAARRTGR+RG
Sbjct:    1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAARRTGRIRG 248          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 365.155 bits (936), Expect = 2.277e-100
Identity = 169/251 (67.33%), Postives = 203/251 (80.88%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAA 756
            MG +IRAQRK +G +F +HT  RKG AQ R+LDF ER+GY++GVV +IIHDPGRGAPLA+V FR+P+ Y    E F+A EGMYTGQFVYCGK A L VGNVLPV  +PEG ++ NVE   GDRG L R+SG+Y +I+ H+ D   TRVKLPSGAKK++PS  R ++G VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HPHGGGNHQH+GH++TV R + PGQKVGLIAARRTG LRG AA
Sbjct:    1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTTVPRQSAPGQKVGLIAARRTGLLRGAAA 250          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 9.566e-99
Identity = 168/248 (67.74%), Postives = 205/248 (82.66%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 747
            MG +IR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GVV +I+HD GRGAPLA+V FR P++Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKKII S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLIAARRTG LRG
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRG 248          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 358.221 bits (918), Expect = 2.783e-98
Identity = 166/248 (66.94%), Postives = 204/248 (82.26%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 747
            MG +IR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++G+V +I+HD GRGAPLA+V FR P++Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKK+I S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLIAARRTG LRG
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRG 248          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 8.953e-97
Identity = 162/248 (65.32%), Postives = 201/248 (81.05%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSVFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 747
            MG +IR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GVV +I+HD GRGAPLA+V FR P++Y  ++E FIA EG++TGQF+Y GK A+L VGN+LP+ S+PEG +V NVE   GDRG LAR SG+Y ++I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLIAARRTG LRG
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAARRTGLLRG 248          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 4.198e-62
Identity = 124/249 (49.80%), Postives = 158/249 (63.45%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGS-VFISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRG 747
            MG  I  QR G G+  F S +H R GPA++  L        +KG + +++HDPGR  PLA++       ++       A EGMY GQ +  G  A +  GN+LP+  IPEG  + N+E   GD G   R+SG YA+I+        T+V+LPSG    +P+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG IAARRTGR +G
Sbjct:    1 MGKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTFLTP-----AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGRA--GTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHIAARRTGRRKG 239          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.350e-60
Identity = 122/246 (49.59%), Postives = 158/246 (64.23%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSV-FISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  + +Q +G G+  + S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG IA+RRTGR
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.131e-60
Identity = 121/246 (49.19%), Postives = 158/246 (64.23%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSV-FISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  + +Q +G G+  + S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T V+LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GGG HQHIG  S+V R   PG+KVG IA+RRTG+
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHIASRRTGK 239          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 6.702e-60
Identity = 120/246 (48.78%), Postives = 158/246 (64.23%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSV-FISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  + +Q +G G+  + S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG IA+RRTGR
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239          
BLAST of CF835762 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.950e-59
Identity = 119/246 (48.37%), Postives = 158/246 (64.23%), Query Frame = 1
Query:    4 MGPLIRAQRKGAGSV-FISHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGR 738
            MG  + +Q +G G+  + S +H RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GGG HQH+G  S+V R   PG+KVG IA+RRTGR
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGGGRHQHLGKPSSVSRHTSPGRKVGHIASRRTGR 239          
The following BLAST results are available for this feature:
BLAST of CF835762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_CAEEL3.513e-10167.3460S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL2_SCHPO2.277e-10067.3360S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL2_CANGA9.566e-9967.7460S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST2.783e-9866.9460S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO8.953e-9765.3260S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_STAMF4.198e-6249.8050S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_METM51.350e-6049.5950S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP5.131e-6049.1950S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM76.702e-6048.7850S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM61.950e-5948.3750S ribosomal protein L2P OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835762 ID=CF835762; Name=CF835762; organism=Citrus sinensis; type=EST; length=764bp
GAAATGGGTCCTTTGATTCGCGCACAGCGTAAGGGTGCAGGTTCGGTCTT
CATTTCCCACACCCACCACCGTAAGGGTCCGGCCCAGTTCCGCAGCCTCG
ACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCGTCGCAGAGATTATT
CACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTTACCTTTCGTCACCC
TTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGCCGCCGAGGGTATGT
ACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCACTCTGATGGTTGGT
AATGTGTTGCCCGTTAGATCTATCCCTGAAGGAGCTGTCGTTTGCAACGT
TGAGCATCATGTTGGTGATCGCGGTGTTCTCGCTAGAGCTTCTGGTGATT
ATGCCGTTATCATCAGTCATAACCCCGATAATGACACCACCAGGGTCAAG
CTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGCTGCAGAGCTATGAT
TGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTG
GTAATGCATACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTG
CGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCA
CCAGCACATTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCC
AGAAGGTTGGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAA
GCTGCTGCCACTGC
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