CF835774

Overview
NameCF835774
Unique NameCF835774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLAF_ARATH (Probable mannan synthase 15 OS=Arabidopsis thaliana GN=CSLA15 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 31/86 (36.05%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSG 366
            +++  +C+ILP ++F+PE  +P W   Y+P+ ++ L+ +  P+SF  ++ ++LFEN M++ +    + GLF+ G   EWVVT+K G
Sbjct:  387 FTYFFYCVILPTSVFLPEVNIPNWSTIYVPSVITLLSAIATPRSFYLVIFWVLFENVMAMHRTKGTLIGLFEGGRVNEWVVTEKLG 472          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA9_ORYSJ (Probable mannan synthase 9 OS=Oryza sativa subsp. japonica GN=CSLA9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSG 366
            +F  +C+++P T+ IPE E+P W   Y+P+ ++ LN +  P+S   ++ ++LFEN MS+ +  A + GL + G   EWVVT+K G
Sbjct:  369 TFVFYCLVVPATVLIPEVEIPRWGYVYLPSIVTILNSIGTPRSLHLLIFWVLFENVMSLHRTKATLIGLLETGRVNEWVVTEKLG 453          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA1_ARATH (Probable mannan synthase 1 OS=Arabidopsis thaliana GN=CSLA1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.517e-15
Identity = 37/108 (34.26%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVS-LVEKESKHNKGSS 432
            +F  +CII+P ++F PE  +P+W   Y+P+ +S  + L  P+SF  ++ ++LFEN M++ +      GL + G   EWVVT+K G + +  L+S +V+++S + + +S
Sbjct:  401 TFFFYCIIVPTSVFFPEIHIPSWSTIYVPSLISIFHTLATPRSFYLVIFWVLFENVMAMHRTKGTCIGLLEGGRVNEWVVTEKLGDALKSKLLSRVVQRKSCYQRVNS 508          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLAB_ARATH (Probable mannan synthase 11 OS=Arabidopsis thaliana GN=CSLA11 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.769e-14
Identity = 35/99 (35.35%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEK 405
            ++F  +C ILP ++F PE  +P W   Y P  ++  N +  P+SF  ++ ++LFEN M++ +      GL + G   EWVVT+K G + E  L+  V K
Sbjct:  289 FTFFFYCFILPTSVFFPEVNIPTWSTVYFPFMITLFNAIATPRSFYLVIFWVLFENVMAMHRTKGTFIGLLEGGRVNEWVVTEKLGDALETKLLPQVRK 387          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLAA_ARATH (Probable mannan synthase 10 OS=Arabidopsis thaliana GN=CSLA10 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.769e-14
Identity = 34/101 (33.66%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKES 411
            ++F  +C+ILP ++F PE  +PAW   YIP+ ++   ++  P+SF  ++ ++LFEN MS+ +      G+ +     EWVVT+K G + +  L+  + K S
Sbjct:  398 FTFIFYCVILPTSVFFPEVNIPAWSTFYIPSMITLCIVIATPRSFYLVIFWILFENVMSMHRTKGTFIGILERQRVNEWVVTEKLGDALKTKLLPRIGKPS 498          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA9_ARATH (Glucomannan 4-beta-mannosyltransferase 9 OS=Arabidopsis thaliana GN=CSLA9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.616e-14
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSG 366
            +F  +C+ILP T+ +PE  +P W   YIP+ ++ LN +  P+S   +V ++LFEN MS+ +  A   GL + G   EW+VT+K G
Sbjct:  374 TFIFYCVILPATVLVPEVTVPKWGAVYIPSVITLLNAVGTPRSLHLMVFWILFENVMSLHRTKATFIGLLEGGRVNEWIVTEKLG 458          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA6_ORYSJ (Probable mannan synthase 6 OS=Oryza sativa subsp. japonica GN=CSLA6 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.374e-13
Identity = 32/86 (37.21%), Postives = 53/86 (61.63%), Query Frame = 1
Query:  109 YSFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSG 366
            ++F  F ++LPM +F PE ++P W +  IP  +  L+ +  P+S   I+ + LFEN M++ +  A + G F+ G A EW+VT+K G
Sbjct:  417 FTFFFFSVLLPMKVFFPEVQIPLWELILIPTAIILLHSVGTPRSIHLIILWFLFENVMALHRLKATLIGFFEAGRANEWIVTQKLG 502          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA1_CYATE (Mannan synthase 1 OS=Cyamopsis tetragonoloba GN=ManS PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.795e-13
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRS 372
            +F  +CI++P  + +PE  L   +  YIPAT++ LN +  P+S   +V ++LFEN MS+ +  A I GL +     EWVVT+K G +
Sbjct:  368 TFFFYCIVIPACVIVPEVNLKKQIAIYIPATITILNAVSTPRSMHLLVLWILFENVMSLHRTKAAIIGLLEANRVNEWVVTEKLGNA 454          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA2_ORYSJ (Probable mannan synthase 2 OS=Oryza sativa subsp. japonica GN=CSLA2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.344e-13
Identity = 45/182 (24.73%), Postives = 80/182 (43.96%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLVEKESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIG 657
            +F  +CI++P++  +PE  +P W + YIP  ++ +N +  P S   +  ++LFEN M++ +  A +SGL +   A +WVVT+K G   + +L               VP L  +K     E             RIY+ E                     ++ ++  Q V+F ++G   +G
Sbjct:  420 TFLFYCIVIPLSAMVPEVTIPVWGLVYIPTAITIMNAIRNPGSVHLMPFWILFENVMAMHRMRAALSGLLETARANDWVVTEKVGDQVKDEL--------------DVPLLEPLKPTECAE-------------RIYIPELLLALYLLICASYDFVLGNHKYYIYIYLQAVAFTVMGFGFVG 574          
BLAST of CF835774 vs. ExPASy Swiss-Prot
Match: CSLA5_ORYSJ (Probable mannan synthase 5 OS=Oryza sativa subsp. japonica GN=CSLA5 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.163e-12
Identity = 49/184 (26.63%), Postives = 86/184 (46.74%), Query Frame = 1
Query:  112 SFTLFCIILPMTMFIPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSS--EGDLVSLVEKESKHNKGSSVPNLSEVKMETKQEKMVSXXXXXXXHNRIYMKEXXXXXXXXXXXXXXXXXXQGIHFYFLLFQGVSFLLVGLDLIG 657
            +F L+ +I+P+++ IPE  LP W V YIP  +  +  +  P++   +  ++LFE+ MS+ +  A ++GL QL    +W+VTKK G ++  E +   L++K  K  +  +  NL E+ +        S        N  Y+                           L  QG++F L+GL+ +G
Sbjct:  411 AFILYNVIIPVSVMIPELFLPIWGVAYIPTALLIVTAIRNPENLHTVPLWILFESVMSMHRLRAAVAGLLQLQEFNQWIVTKKVGNNAFDENNETPLLQKSRK--RLINRVNLPEIGLSVFLIFCASYNLVFHGKNSFYIN--------------------------LYLQGLAFFLLGLNCVG 566          
The following BLAST results are available for this feature:
BLAST of CF835774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
CSLAF_ARATH9.517e-1536.05Probable mannan synthase 15 OS=Arabidopsis thalian... [more]
CSLA9_ORYSJ9.517e-1538.82Probable mannan synthase 9 OS=Oryza sativa subsp. ... [more]
CSLA1_ARATH9.517e-1534.26Probable mannan synthase 1 OS=Arabidopsis thaliana... [more]
CSLAB_ARATH2.769e-1435.35Probable mannan synthase 11 OS=Arabidopsis thalian... [more]
CSLAA_ARATH2.769e-1433.66Probable mannan synthase 10 OS=Arabidopsis thalian... [more]
CSLA9_ARATH3.616e-1440.00Glucomannan 4-beta-mannosyltransferase 9 OS=Arabid... [more]
CSLA6_ORYSJ1.374e-1337.21Probable mannan synthase 6 OS=Oryza sativa subsp. ... [more]
CSLA1_CYATE1.795e-1339.08Mannan synthase 1 OS=Cyamopsis tetragonoloba GN=Ma... [more]
CSLA2_ORYSJ2.344e-1324.73Probable mannan synthase 2 OS=Oryza sativa subsp. ... [more]
CSLA5_ORYSJ1.163e-1226.63Probable mannan synthase 5 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N21_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835774 ID=CF835774; Name=CF835774; organism=Citrus sinensis; type=EST; length=814bp
CTGACTGGTACTATTCTGTTATTTAATTTGGTTTTGCAGATAAGCATGGG
GAAGAAATTTAATTTGATCTTTCTTTTCTTTCTGCTCAGAAAACTTATCC
TACCATTTTATTCTTTCACCCTCTTTTGTATAATTCTTCCCATGACAATG
TTTATCCCAGAGGCTGAGCTCCCTGCTTGGGTCGTCTGTTACATACCGGC
CACCATGTCATTTCTCAACATTCTCCCTGCTCCAAAATCCTTCCCATTTA
TTGTCCCTTACCTTCTTTTTGAAAACACAATGTCAGTGACCAAGTTCAAT
GCCATGATATCTGGCCTCTTCCAGCTCGGAAGTGCGTATGAGTGGGTCGT
TACCAAGAAATCCGGCCGCTCCTCTGAGGGTGATCTTGTTTCATTGGTTG
AGAAAGAGTCAAAACATAATAAGGGGTCCTCTGTACCCAACCTCAGTGAA
GTGAAGATGGAAACTAAACAAGAGAAAATGGTTTCCAAGAAGAAGAAGAA
GAAGAAGCATAATAGGATATACATGAAGGAATTGACACTGGCCTTCCTTC
TATTAACAGCTTCAGCTAGGAGCCTCCTGTCTGCTCAAGGGATCCATTTC
TACTTCTTACTCTTTCAGGGGGTATCATTCCTGCTCGTTGGTCTAGACTT
GATTGGTGAGCAGCTTGATTGAAGGCAAACAATAGGCATTGTAGGATAAG
ATATGGATAATTTCAGGCATACATGAAATGGGTGGACATCAGATAGTTAA
TTATCACTGAAACAAACCATCTGCGGGGGGGACTTTAGAGGGCCGTGACT
GCTCTGCTTGCTTG
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