CF835775

Overview
NameCF835775
Unique NameCF835775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 187.963 bits (476), Expect = 4.946e-47
Identity = 98/183 (53.55%), Postives = 127/183 (69.40%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA-DTDSRAEPQTIKIN 708
            L KLLLIGDSGVGKSCLLLR                  KI+TIELDGK IKLQIWDTAGQERF TIT++YYRGA G L+VYDVTD+ S+ N++ W++ I++HAS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+++     S  E   +KI+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGERPNLKID 189          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.102e-46
Identity = 96/167 (57.49%), Postives = 121/167 (72.46%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 663
            L KLLLIGDSGVGKSCLLLR                  KIRTIEL+GK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ +F N+R W++ I++ A +NVNK+LVGNK+D+  +K+ V  +  +A AD   I F ETSAK + NVE+ F ++A +IK RL
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDL-VAKKVVDFNTAKAFADSLQIPFLETSAKQSTNVEQAFMTMATEIKNRL 173          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.439e-46
Identity = 96/165 (58.18%), Postives = 119/165 (72.12%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 657
            L KLLLIGDSGVGKSCLLLR                  KIRTI LDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  SFNN++ W++ I+++A D+V ++LVGNK D+ E K+ V TS  +  AD  GI F ETSAK++ NVE+ F  +A +IK+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIE-KKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.469e-46
Identity = 92/166 (55.42%), Postives = 115/166 (69.28%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 660
            ++KLLL+GDSGVGKSCLLLR                  KIRTIE  GKRIKLQ+WDTAGQERFRTITTAYYRGAMGI+L+YDVTD  SF N+ NW + + QHA+++    LVGNK D DE  R V   +GQ LA +  + F E SAK+N NV+ +F+ +A  I+++
Sbjct:   14 IMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCD-DEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 9.653e-43
Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 666
            L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     +  AD   + F ETSA  + NVE+ F ++AR IK+ ++
Sbjct:    8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS 174          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.150e-42
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 657
            L+K+L+IGDSGVGKSC+LLR                   IRTIELDGK+IKLQIWDTAGQERF+TITT+YYRGA G+++VYD+T   SFN+I+ W+ ++++ AS +V K++VGNK D++ SKRAV     +  ADE  I   ETSAK +  ++E F  +A DIK+
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLN-SKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.056e-41
Identity = 85/184 (46.20%), Postives = 122/184 (66.30%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA---DTDSRAEPQTIKI 705
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN++++W   I+ ++ +N   +LVGNK DMD S+R V   +G+ LAD+ G++FFETSAK N+NV+ VF  +   I  ++A   D D + +P+  K+
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMD-SERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDPQQQPKGQKL 204          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.035e-41
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 657
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  +   + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 9.035e-41
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 657
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  +   + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of CF835775 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.180e-40
Identity = 82/165 (49.70%), Postives = 113/165 (68.48%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 657
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  +   + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
The following BLAST results are available for this feature:
BLAST of CF835775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1C_HUMAN4.946e-4753.55Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1A_DICDI1.102e-4657.49Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB1B_DICDI1.439e-4658.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
SEC4_CANAL5.469e-4655.42Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
YPT1_YEAST9.653e-4351.79GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB1C_DICDI2.150e-4252.73Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB3_CAEEL4.056e-4146.20Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB15_RAT9.035e-4149.70Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN9.035e-4149.70Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN1.180e-4049.70Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N23_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835775 ID=CF835775; Name=CF835775; organism=Citrus sinensis; type=EST; length=759bp
TGCTGACGTATCATATACGCTTCGTTCACTCCCTCCTCATTTCTCTCATC
ATCTCCTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGAT
ATAAATTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCT
GATTACGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGG
TAAGAGTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTT
TTATTACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGAT
GGAAAACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTT
TCGAACAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCG
TATATGATGTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATC
CGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGG
TAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGG
GCCAAGCTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCA
AAGACAAACCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACAT
CAAGCAAAGGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCA
AAATTAACCAACCTGACCAGGCAGGTGGGGCTGCTCAAGCTGCCCAAAGA
TCAGCTTGC
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