CF835776

Overview
NameCF835776
Unique NameCF835776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38
Identity = 78/165 (47.27%), Postives = 114/165 (69.09%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 660
            K++L+GDSGVGK+C L++                   + + + +DG R+KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++SSF+NIR W+  I ++A  +V  +L+GNKAD+  S+R + +  G+ LA EYG+ F ETSAKT +NVE  F +IA+++K R
Sbjct:   31 KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADV-SSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYR 194          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.955e-38
Identity = 81/183 (44.26%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKIN 708
            L K+++IGDSG GKS LLLR                  KI+T+++D   IKLQIWDTAGQERFRTIT+ YYRGA GI+ VYDVT++ SF++I   W+++I+++A+ NV K+L+GNK D+ +S R V   + + +A++  + + E SAKT+ NVE+ F +IA+ +K ++    S A   T+ ++
Sbjct:    7 LFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDS-RVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTIAKALKDKVTQYPSNAPTSTVNLS 188          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.166e-38
Identity = 78/165 (47.27%), Postives = 114/165 (69.09%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 660
            K++L+GD+GVGK+C L++                   + + + +DG R+KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++SSF+NIR W+  I ++A  +V  +L+GNKADM  S+R + +  G+ LA EYG+ F ETSAKT +NVE  F +IA+++K R
Sbjct:   31 KVMLLGDTGVGKTCFLIQFKDGAFLSGTFIATVGIDFRNKVVTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADM-SSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYR 194          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 79/176 (44.89%), Postives = 120/176 (68.18%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ 693
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++ SF+NI+ W+  I+++A  +V  +L+GNK D  + +R V    G+ LA EYG+ F ETSAK+ LNV+  F +IA+++KQR   T + +EP+
Sbjct:   66 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQ-ERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQR--STKAPSEPR 238          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 78/171 (45.61%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDS 678
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQIWDTAGQERFR++T AYYR A  +LL+YD+T++ SF+NI+ W+  I+++A  +V  +L+GNK D  +  R V    G+ LA EYG+ F ETSA+T LNV+  F +IA+++KQR A   S
Sbjct:   69 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQD-RVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPS 238          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 78/163 (47.85%), Postives = 109/163 (66.87%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            + K+LLIGDS VGK+ LLLR                  K + I +DG+   LQIWDTAGQERFRTIT+++YRGA G+L+ YDVTD+ ++NN+R W++ I+++A   V+++LVGNK D+ E ++ V TS  +  AD  GI F E SA T +NVEE F ++A +I
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDL-EDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEI 167          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 5.711e-37
Identity = 78/156 (50.00%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVF 630
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILVGNK D+ E +R V    GQ LA + G +FFE SAK N+NV++VF
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVF 176          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.742e-37
Identity = 77/165 (46.67%), Postives = 113/165 (68.48%), Query Frame = 1
Query:  169 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 660
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WDTAGQERFR++T AYYR A  +LL+YDVT+++SF+NI+ W+  I ++A  +V  +L+GNK D    +R V    G+ LA EYG+ F ETSAKT LNV+  F +IA+++KQR
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVD-SAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKQR 228          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 152.91 bits (385), Expect = 1.662e-36
Identity = 85/200 (42.50%), Postives = 116/200 (58.00%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----------KQRLADTDSRAEPQTIKINQPDQAGGA 732
            L K++LIGDSGVGKS +L R                    RT +++GK IK QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N+  W+R +  HA  N+  ++ GNK+D++   R+V    GQ+LA++ G+ F ETSA    NVE+ F +I  +I           Q  A  +S    Q   IN  D +GGA
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINVDDTSGGA 210          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.835e-36
Identity = 75/163 (46.01%), Postives = 107/163 (65.64%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 651
            L K++LIGDSGVGKS +L R                    RT++++GK +K QIWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ GNK+D+ +  RAV    GQALA++ G+ F ETSA   +N+E+ F +I  +I
Sbjct:   12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDL-KHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEI 173          
The following BLAST results are available for this feature:
BLAST of CF835776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB37_MOUSE3.955e-3847.27Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB1_THEAN3.955e-3844.26Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RAB37_HUMAN5.166e-3847.27Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]
RAB26_RAT1.963e-3744.89Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB26_MOUSE1.963e-3745.61Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]
RABG2_DICDI5.711e-3747.85Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB3D_RAT5.711e-3750.00GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RAB26_HUMAN9.742e-3746.67Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
RAA2C_ARATH1.662e-3642.50Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB2BV_BETVU2.835e-3646.01Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835776 ID=CF835776; Name=CF835776; organism=Citrus sinensis; type=EST; length=736bp
TGCTGACGTATCAGAGACGCTTCGTTCACTCCCTCCTCATTTCTCTCATC
ATCTCCTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGAT
ATAAATTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCT
GATTACGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGG
TAAGAGTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTT
TTATTACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGAT
GGAAAACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTT
TCGAACAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCG
TATATGATGTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATC
CGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGG
TAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGG
GCCAAGCTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCA
AAGACAAACCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACAT
CAAGCAAAGGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCA
AAATTAACCAACCTGACCAGGCAGGGGGGGCTGCTC
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