CF835776

Overview
NameCF835776
Unique NameCF835776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQPDQAGGA 732
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI     A  A
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNA 196          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQPDQAGGA 732
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI     A  A
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNA 196          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.236e-40
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQPDQAGGA 732
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI     A  A
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHAATNA 196          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 89/206 (43.20%), Postives = 123/206 (59.71%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD----------------TDSRAEPQTIKINQPDQAGGA 732
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G+  A E+G+ F ETSA+T  NVEE F + A++I +++ D                    A PQT+K   P + G A
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTH-RRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVK---PGEGGAA 207          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.226e-40
Identity = 88/192 (45.83%), Postives = 121/192 (63.02%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKINQPDQAGGA 732
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + A++I +++ +   D   E   IKI     A  A
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGPQHGATNA 196          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 81/169 (47.93%), Postives = 113/169 (66.86%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD 669
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G+  A E+G+ F ETSA+T  NVEE F + A++I +++ D
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTH-RRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQD 173          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB3B_MOUSE (Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 81/170 (47.65%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 672
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  +++D+
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB3B_MESAU (Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 81/170 (47.65%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 672
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  +++D+
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDS 190          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQ 720
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++++   A+P      Q  Q
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQ 206          
BLAST of CF835776 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.519e-40
Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 1
Query:  163 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPDQ 720
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++++   A+P      Q  Q
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQ 206          
The following BLAST results are available for this feature:
BLAST of CF835776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_HUMAN3.236e-4045.83Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK3.236e-4045.83Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA3.236e-4045.83Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
YPTC4_CHLRE4.226e-4043.20GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2A_RABIT4.226e-4045.83Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
YPTV4_VOLCA5.519e-4047.93GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB3B_MOUSE5.519e-4047.65Ras-related protein Rab-3B OS=Mus musculus GN=Rab3... [more]
RAB3B_MESAU5.519e-4047.65Ras-related protein Rab-3B OS=Mesocricetus auratus... [more]
RAB3A_RAT5.519e-4044.62Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG5.519e-4044.62Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01N24_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835776 ID=CF835776; Name=CF835776; organism=Citrus sinensis; type=EST; length=736bp
TGCTGACGTATCAGAGACGCTTCGTTCACTCCCTCCTCATTTCTCTCATC
ATCTCCTTTATTCAGAATTTGCGCTCTCTCTCTTGATCTGCTTGTGAGAT
ATAAATTTTGGTTAATTGCTATGGCTGCTCCACCTGCAAGAGCCCGGGCT
GATTACGATTACCTCATAAAGCTGCTCCTGATCGGCGACAGCGGTGTTGG
TAAGAGTTGTCTCCTTCTGCGATTCTCTGATGGTTCCTTTACTACCAGTT
TTATTACAACCATTGGTATTGACTTCAAGATTAGGACCATAGAGCTTGAT
GGAAAACGAATTAAACTTCAAATATGGGATACTGCAGGTCAAGAGAGGTT
TCGAACAATTACAACCGCATACTACCGAGGAGCCATGGGAATATTGCTCG
TATATGATGTCACCGACGAGTCATCTTTCAACAACATTAGGAATTGGATC
CGTAATATCGAACAGCATGCATCTGACAATGTAAACAAGATTCTGGTGGG
TAACAAGGCCGACATGGACGAAAGCAAAAGGGCTGTCCCCACTTCAAAGG
GCCAAGCTCTTGCTGATGAATATGGCATCAAGTTCTTTGAGACTAGTGCA
AAGACAAACCTAAATGTGGAGGAGGTTTTCTTTTCAATTGCAAGGGACAT
CAAGCAAAGGCTTGCAGATACAGACTCTAGGGCTGAGCCTCAGACTATCA
AAATTAACCAACCTGACCAGGCAGGGGGGGCTGCTC
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