CF835821

Overview
NameCF835821
Unique NameCF835821
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length771
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_SOLTU (Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.157e-92
Identity = 164/169 (97.04%), Postives = 165/169 (97.63%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIP PRLHFFMVGF PLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V
Sbjct:  254 RKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPV 422
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB1_SOLTU (Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.157e-92
Identity = 164/169 (97.04%), Postives = 165/169 (97.63%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIP PRLHFFMVGF PLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMND V
Sbjct:  254 RKLAVNLIPLPRLHFFMVGFAPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDPV 422
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB1_MAIZE (Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.157e-92
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPHGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 5.157e-92
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSSVCDIPPNGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB7_ARATH (Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.735e-92
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_ORYSJ (Tubulin beta-2 chain OS=Oryza sativa subsp. japonica GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.735e-92
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.735e-92
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY SLTVPELTQQMWD+KNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQM+NVQNKNSSYFVEWIPNNVKS+VCDIPP GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPNNVKSTVCDIPPTGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB_HORVU (Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.796e-92
Identity = 163/169 (96.45%), Postives = 165/169 (97.63%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GL MASTF+GNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB1_ANEPH (Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 336.65 bits (862), Expect = 8.796e-92
Identity = 164/169 (97.04%), Postives = 165/169 (97.63%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY SLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP GLKMA TFIGNSTSIQEMFRRVS+QFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYXSLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPVGLKMAVTFIGNSTSIQEMFRRVSDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 419
[Close]
BLAST of CF835821 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 1.149e-91
Identity = 163/169 (96.45%), Postives = 166/169 (98.22%), Query Frame = -3 
Query:  263 RKLAVNLIPFPRLHFFMVGFVPLTSRGSQQYISLTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPRGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV 769
            RKLAVNLIPFPRLHFFMVGF PLTSRGSQQY +LTVPELTQQMWDAKNMMCAADPRHGRYLTA AMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP+GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAES+MNDLV
Sbjct:  251 RKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTACAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESDMNDLV 419
The following BLAST results are available for this feature:
BLAST of CF835821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 407
Match NameE-valueIdentityDescription
TBB2_SOLTU5.157e-9297.04Tubulin beta-2 chain OS=Solanum tuberosum GN=TUBB2... [more]
TBB1_SOLTU5.157e-9297.04Tubulin beta-1 chain OS=Solanum tuberosum GN=TUBB1... [more]
TBB1_MAIZE5.157e-9296.45Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=... [more]
TBB1_ELEIN5.157e-9296.45Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB7_ARATH6.735e-9296.45Tubulin beta-7 chain OS=Arabidopsis thaliana GN=TU... [more]
TBB2_ORYSJ6.735e-9296.45Tubulin beta-2 chain OS=Oryza sativa subsp. japoni... [more]
TBB2_ARATH6.735e-9296.45Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB_HORVU8.796e-9296.45Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2... [more]
TBB1_ANEPH8.796e-9297.04Tubulin beta-1 chain OS=Anemia phyllitidis GN=TUBB... [more]
TBB5_GOSHI1.149e-9196.45Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P05_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835821 ID=CF835821; Name=CF835821; organism=Citrus sinensis; type=EST; length=771bp
TTTTTTTTTTTTTTTGATCAAACTAACAATTCTTTATTCAAATGCTCGAA
AAGAACAACAGACAATATCGTCTTAAAAGACAGAAATTGTAAACAACAAC
AAAAGAAGCCACAGTACAAGGGGGTTGGTCTCATCAAGCGTTCTTTTTCT
GTGGTTGCCCTTTGATTGCTACCCTTTCTTAGCCCTCGAAGCTCTCCTCA
AGGCCCTCCTCATACTCTTCCTCATCATCAGCTGTTGCATCCTGATATTG
TTGGTACTCAGCCACCAAGTCATTCATGTTGCTCTCTGCCTCAGTGAACT
CCATCTCATCCATACCCTCCCCAGTATACCAATGCAAAAAGGCCTTACGC
CGGAACATGGCAGTAAACTGTTCACTCACCCTCCTGAACATCTCTTGGAT
GGATGTTGAGTTACCAATAAAAGTAGATGCCATCTTCAGACCACGTGGTG
GAATATCGCACACGCTGGACTTCACATTGTTGGGGATCCACTCCACAAAG
TAGGATGAATTCTTGTTCTGTACATTAATCATCTGCTCATCCACCTCTTT
GGTGCTCATCTTTCCTCTGAACATGGCTGAGGCTGTGAGGTAGCGCCCAT
GGCGGGGGTCAGCAGCACACATCATATTCTTGGCATCCCACATTTGCTGG
GTCAGCTCTGGCACAGTGAGGGAGATATATTGCTGGGATCCCCGTGAGGT
GAGTGGTACAAATCCCACCATGAAGAAATGAAGACGTGGGAATGGGATCA
GATTAACAGCCAGCTTCCTGA
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