CF835832

Overview
NameCF835832
Unique NameCF835832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_PIG (60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_MOUSE (60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_MACFA (60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_HUMAN (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_CHICK (60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_CERNI (60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_BOVIN (60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.180e-37
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EER+KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_CANFA (60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 2.629e-37
Identity = 76/136 (55.88%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+KP   V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLMPTRY++D+ L K VV+ D  +    K  A +E K + EE++KTGKN+WFF KLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKTGKNKWFFQKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27B_YEAST (60S ribosomal protein L27-B OS=Saccharomyces cerevisiae GN=RPL27B PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.434e-37
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KFLK     ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPSKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27A_YEAST (60S ribosomal protein L27-A OS=Saccharomyces cerevisiae GN=RPL27A PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 9.990e-37
Identity = 71/136 (52.21%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KFLK     ++++GRYAG+K VIVK  D+G++   +GH LVAGI++YP KV +K  AKK AK++++K F+K+VNY HL+PTRYTLDV+  K VVS ++ +   ++  A K  KK  EER + GKN+WFF+KLRF
Sbjct:    1 MAKFLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPTRYTLDVEAFKSVVSTETFEQPSQREEAKKVVKKAFEERHQAGKNQWFFSKLRF 136          
The following BLAST results are available for this feature:
BLAST of CF835832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PIG1.180e-3756.6260S ribosomal protein L27 OS=Sus scrofa GN=RPL27 P... [more]
RL27_MOUSE1.180e-3756.6260S ribosomal protein L27 OS=Mus musculus GN=Rpl27... [more]
RL27_MACFA1.180e-3756.6260S ribosomal protein L27 OS=Macaca fascicularis G... [more]
RL27_HUMAN1.180e-3756.6260S ribosomal protein L27 OS=Homo sapiens GN=RPL27... [more]
RL27_CHICK1.180e-3756.6260S ribosomal protein L27 OS=Gallus gallus GN=RPL2... [more]
RL27_CERNI1.180e-3756.6260S ribosomal protein L27 OS=Cervus nippon GN=RPL2... [more]
RL27_BOVIN1.180e-3756.6260S ribosomal protein L27 OS=Bos taurus GN=RPL27 P... [more]
RL27_CANFA2.629e-3755.8860S ribosomal protein L27 OS=Canis familiaris GN=R... [more]
RL27B_YEAST3.434e-3752.2160S ribosomal protein L27-B OS=Saccharomyces cerev... [more]
RL27A_YEAST9.990e-3752.2160S ribosomal protein L27-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835832 ID=CF835832; Name=CF835832; organism=Citrus sinensis; type=EST; length=645bp
CCGCGGGTGCGCCATGAGCGAGAGTTGAAATGGTGAAGTTTCTGAAACCA
AACATGGCCGTGATCCTTCTTCAGGGCCGTTACGCCGGCCGGAAGGCGGT
GATCGTGAAGTCGTTCGACGACGGGACCCGCGAGAGGGCGTACGGGCACT
GTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGGTCATCCGCAAGGAC
TCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAAGGCCTTCGTCAAGTT
GGTCAACTACCAGCACCTGATGCCCACGCGCTACACTCTCGACGTCGATT
TGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGCAAGGACAAGAAGGTG
ACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGTTTAAGACTGG
CAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTTAGATTTTTAACCAAA
GGAAGAAAGCAACTTGTCGTTTTGTTTTGTTTTGTGTTATTGAAAACGCT
TTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTAGTGTTTTGTGAACTT
AATTTTTTCTGGATCTGGTACTATTTTTATGTGATATTATTGGGTTTATA
ATGTTTACTCAAGACGTCATAAATTNNANAAAAAAAAAAAAAAAA
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