CF835832

Overview
NameCF835832
Unique NameCF835832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_CAEEL (60S ribosomal protein L27 OS=Caenorhabditis elegans GN=rpl-27 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.916e-34
Identity = 67/136 (49.26%), Postives = 98/136 (72.06%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVDL-KDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M K +KP   V++L+G+YAGRKAV+VK  D+G  +R Y H ++AGI +YP KV +    KK  K++++K F+K+V+Y HL+PTRY++DV   K  ++ ++L++  KK  A  E K + EER+KTGKN+WFFTKLRF
Sbjct:    1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27A_SCHPO (60S ribosomal protein L27-A OS=Schizosaccharomyces pombe GN=rpl27a PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.916e-34
Identity = 64/136 (47.06%), Postives = 99/136 (72.79%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            MVK LKP    ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ A++SRVK F+K+VNY HLMPTRY L++D LK +++AD+ +   ++  A K  KK  EE++++GK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_CANAL (60S ribosomal protein L27 OS=Candida albicans GN=RPL27 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.303e-33
Identity = 68/136 (50.00%), Postives = 95/136 (69.85%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            M KF+K     I+++GRYAG+K VIVK  D+GT+   + H +VAGI++ P KV +K  AKK  K+++VK FVKLVNY HLMPTRY+LDV+  K  V++++L+   ++  A K  KK  EE+ + GKN+WFF KL F
Sbjct:    1 MAKFIKSGKVAIVVRGRYAGKKVVIVKPHDEGTKSHPFPHAIVAGIERAPLKVTKKMDAKKVTKRTKVKPFVKLVNYNHLMPTRYSLDVESFKSAVTSEALEEPSQREEAKKVVKKAFEEKHQAGKNKWFFQKLHF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27B_SCHPO (60S ribosomal protein L27-B OS=Schizosaccharomyces pombe GN=rpl27b PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.950e-32
Identity = 63/136 (46.32%), Postives = 95/136 (69.85%), Query Frame = 3
Query:   30 MVKFLKPNMAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLDVD-LKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            MVK LKP    ++ +GR+AG+K VI+++ D G++   +GH +VAG+++YP KV +   AK+ AK+SRVK F+K++NY HLMPTRY L++D LK +V+  +     ++  A K  K   EE+++TGK+ WFFT LRF
Sbjct:    1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136          
BLAST of CF835832 vs. ExPASy Swiss-Prot
Match: RL27_DICDI (60S ribosomal protein L27 OS=Dictyostelium discoideum GN=rpl27 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.264e-31
Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   36 KFLKPNMAVILLQGRYAGRKAVIVKSFDDGT--RERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLMPTRYTLD-------VDLKDVVSADSLQSKDKKVTACKETKKRLEERFKTGKNRWFFTKLRF 434
            KF+KP   VILL G+YAGRKAV++K+FDD T  + R YGHCLVAGI KYP  ++R  S K   K++ +++FVK+VNY H+MPTRY  +         LK+ V+ +S Q   K+       KK  E + K GK++WFF+KLRF
Sbjct:    4 KFIKPGRLVILLNGKYAGRKAVVIKTFDDATASKSRPYGHCLVAGIDKYPRSIVRSMSRKTILKRTAIRSFVKVVNYNHIMPTRYNFEGRDESAFTGLKNTVTVESSQVA-KRAHTRLAVKKIFEAKHKAGKSKWFFSKLRF 144          
The following BLAST results are available for this feature:
BLAST of CF835832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_CAEEL7.916e-3449.2660S ribosomal protein L27 OS=Caenorhabditis elegan... [more]
RL27A_SCHPO7.916e-3447.0660S ribosomal protein L27-A OS=Schizosaccharomyces... [more]
RL27_CANAL2.303e-3350.0060S ribosomal protein L27 OS=Candida albicans GN=R... [more]
RL27B_SCHPO1.950e-3246.3260S ribosomal protein L27-B OS=Schizosaccharomyces... [more]
RL27_DICDI1.264e-3148.5960S ribosomal protein L27 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P12_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835832 ID=CF835832; Name=CF835832; organism=Citrus sinensis; type=EST; length=645bp
CCGCGGGTGCGCCATGAGCGAGAGTTGAAATGGTGAAGTTTCTGAAACCA
AACATGGCCGTGATCCTTCTTCAGGGCCGTTACGCCGGCCGGAAGGCGGT
GATCGTGAAGTCGTTCGACGACGGGACCCGCGAGAGGGCGTACGGGCACT
GTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGGTCATCCGCAAGGAC
TCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAAGGCCTTCGTCAAGTT
GGTCAACTACCAGCACCTGATGCCCACGCGCTACACTCTCGACGTCGATT
TGAAGGACGTCGTGTCGGCCGATTCCCTCCAGAGCAAGGACAAGAAGGTG
ACCGCTTGCAAGGAGACCAAGAAGCGCCTCGAGGAGAGGTTTAAGACTGG
CAAGAATCGTTGGTTCTTTACTAAGCTCAGGTTTTAGATTTTTAACCAAA
GGAAGAAAGCAACTTGTCGTTTTGTTTTGTTTTGTGTTATTGAAAACGCT
TTAGTTGTTAAAGTGCGAATTTTGAGATTTATGTAGTGTTTTGTGAACTT
AATTTTTTCTGGATCTGGTACTATTTTTATGTGATATTATTGGGTTTATA
ATGTTTACTCAAGACGTCATAAATTNNANAAAAAAAAAAAAAAAA
back to top