CF835834

Overview
NameCF835834
Unique NameCF835834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7A_YEAST (60S ribosomal protein L7-A OS=Saccharomyces cerevisiae GN=RPL7A PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.873e-60
Identity = 103/191 (53.93%), Postives = 147/191 (76.96%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLG--GLKKKRNHYVEGGDAGN 758
            R +I  R   Y KEY+  ++ +I+ KR+AK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL +I +G F+KV KATL +L  +EPYV YGYP+  ++++L+YKRG+GK+NKQR+ L+DN+IIE  LG++GI+ ++DLIHEI+TVGPHFK+ANNFLWPFKL  P G  G+ +K  H+++GG  GN
Sbjct:   41 RAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVTKATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILSIDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGN 231          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.304e-59
Identity = 105/191 (54.97%), Postives = 144/191 (75.39%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLG--GLKKKRNHYVEGGDAGN 758
            R  I  R   + KEY+  ++ +I  KREAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +V++L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHFK+ANNFLWPFKL  P G  G+ +K  H+++GG  GN
Sbjct:   41 RAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGN 231          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.234e-57
Identity = 106/191 (55.50%), Postives = 140/191 (73.30%), Query Frame = 3
Query:  189 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW FKL+ P GG   KR  ++  GD GN
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGN 235          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.234e-57
Identity = 106/191 (55.50%), Postives = 140/191 (73.30%), Query Frame = 3
Query:  189 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAGN 758
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW FKL+ P GG   KR  ++  GD GN
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGN 235          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.249e-50
Identity = 101/189 (53.44%), Postives = 131/189 (69.31%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGL-KKKRNHYVEGGDAG 755
            RK  + R + +   Y + ++E IRL R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SV+ELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HFKE   FLWPF L      L +KK  H+ EG  AG
Sbjct:   47 RKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAG 235          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.295e-39
Identity = 84/184 (45.65%), Postives = 120/184 (65.22%), Query Frame = 3
Query:  210 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGG-LKKKRNHYVEGGDAGN 758
            R + +  E+  ++ ++IR+K+  K         ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSVK+LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HF+E   FL P KL  P+   L +K+  + EGGD GN
Sbjct:   51 RPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGN 234          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 2.140e-34
Identity = 76/186 (40.86%), Postives = 113/186 (60.75%), Query Frame = 3
Query:  198 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAG 755
            L + R + +  +   ++++++RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF L       K +     E G  G
Sbjct:   47 LRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPG 232          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.767e-34
Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 3
Query:  204 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAG 755
            + R + +  +   +Q++ +R++R         V  +  L F+IR+  I  V    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSV+ELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E ++FL PF L       + +     E G  G
Sbjct:   49 FRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPG 232          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 6.226e-34
Identity = 76/186 (40.86%), Postives = 112/186 (60.22%), Query Frame = 3
Query:  198 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAG 755
            L + R + +  +   ++++ +RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF L       K +     E G  G
Sbjct:   47 LRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPG 232          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.090e-33
Identity = 74/188 (39.36%), Postives = 114/188 (60.64%), Query Frame = 3
Query:  192 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLKKKRNHYVEGGDAG 755
            ++L + R + +  +   + ++ +RL+R      G  V  +  L F++RI  I+ V    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+  + FL PF+L       K +     E G  G
Sbjct:   46 KELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPG 233          
The following BLAST results are available for this feature:
BLAST of CF835834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7A_YEAST3.873e-6053.9360S ribosomal protein L7-A OS=Saccharomyces cerevi... [more]
RL7_CANGA7.304e-5954.9760S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL72_PARTE5.234e-5755.5060S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE5.234e-5755.5060S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO1.249e-5053.4460S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH1.295e-3945.6560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_PONAB2.140e-3440.8660S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_MOUSE4.767e-3439.6760S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_HUMAN6.226e-3440.8660S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PIG3.090e-3339.3660S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835834 ID=CF835834; Name=CF835834; organism=Citrus sinensis; type=EST; length=760bp
CGAAGCCAGAACCCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAAGA
ACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCAGA
GTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGA
AGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTC
ATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAA
AGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATG
TCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCAAT
GCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACA
GATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGC
TGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGT
GTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAG
GATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATG
GAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCT
CACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTNCAGGCACC
ATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATG
CAGGAAACCG
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