CF835834

Overview
NameCF835834
Unique NameCF835834
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RLP7_YEAST (Ribosome biogenesis protein RLP7 OS=Saccharomyces cerevisiae GN=RLP7 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 65/139 (46.76%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  318 LLFIIRIRGINAVDPKTK--KILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGG 710
            LLFI+R+RG  AV+   K  KIL LLRL +   GVF+K+ K    +L  + PYV  G P+L S++ LI KRG        +     I L DN+I+E+ LG HGIIC+ED+IHEI T+G  F   N FL PFKL   + G
Sbjct:  141 LLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLTKNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLGDHGIICVEDIIHEIATMGESFSVCNFFLQPFKLNREVSG 279          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RL7_ENCCU (60S ribosomal protein L7 OS=Encephalitozoon cuniculi GN=RPL7 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.371e-25
Identity = 63/183 (34.43%), Postives = 110/183 (60.11%), Query Frame = 3
Query:  213 TKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGGLK-KKRNHYVEGGDAGN 758
            T++   +Y E+++E+  L++++ +K GFYV  EA+   +I IR      PK +K+L+L RL++I   V ++ NK+T  ML  ++ +V +G   ++ +++L+Y +G G+    R+ LT+  I +   G+  I C+E+L+H I      FK+ N+FL+PF L  P GG K +K   + +GG  GN
Sbjct:   48 TEKLLNKYYEQEREI--LEKKSSMKNGFYVPKEAEFFAVILIRSKCNCPPKVRKVLELFRLKRINTCVLVRNNKSTRKMLQIIKDHVAFGTIGMELLRKLVYTKGSGRNGHVRVKLTNEFIEDMFDGK--IRCIEELVHHIYNGTEMFKKVNSFLYPFHLSPPRGGFKGQKSKSFNDGGSVGN 226          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RLP7_KLULA (Ribosome biogenesis protein RLP7 OS=Kluyveromyces lactis GN=RLP7 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.283e-25
Identity = 68/169 (40.24%), Postives = 97/169 (57.40%), Query Frame = 3
Query:  228 KEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVD--PKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGG 710
            ++ DEE +E   L RE  +  G     E  LLF+IR++G  AV    K  K+L LLRL ++  GVF+K+ K    +L  V PY+  G P+L S++ LI KR      +      + I L DN+I+E+ LG  G+IC+ED+IHEI T+G +F +   FL PFKL   + G
Sbjct:  112 QDVDEEDEEDDGLIREKIVYDG-----EPSLLFVIRVKGPTAVKIPAKAYKVLSLLRLVELNTGVFIKLTKDVYPLLKLVSPYIVIGQPSLASIRSLIQKRSRIMWQRPEDKEPKEIILNDNNIVEEKLGDEGVICIEDIIHEISTLGENFSKCTFFLLPFKLNREVSG 275          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RLP7_CANGA (Ribosome biogenesis protein RLP7 OS=Candida glabrata GN=RLP7 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.424e-24
Identity = 64/160 (40.00%), Postives = 97/160 (60.62%), Query Frame = 3
Query:  303 NPEAKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRG---YGKLNKQR---IALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGG------LKKKRNHYVE 740
            N E +LLF++R++G  A  +  K  +IL  LRL ++   VF+K+ + T ++L  + PYV  G P+LKS++ LI KR    Y + +++    I L DN+I+E+ LG  G+IC++D+IHEI T+G +F + N FL PFKL   + G      LKK     VE
Sbjct:  131 NGEEQLLFVLRVKGPVAASIPHKAYRILSTLRLEEVNTAVFIKLTETTFSLLKIIAPYVIVGKPSLKSIRSLIQKRSKIVYKREDEEEAKEIILNDNNIVEEKLGDCGVICIDDIIHEIATLGENFTKCNFFLQPFKLNREVSGFSSLNKLKKLEQREVE 290          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RLP7_DEBHA (Ribosome biogenesis protein RLP7 OS=Debaryomyces hansenii GN=RLP7 PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.439e-22
Identity = 62/144 (43.06%), Postives = 89/144 (61.81%), Query Frame = 3
Query:  312 AKLLFIIRI----RGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY-----GKLNKQRIALTDNS-IIEQALGQH-GIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGG 710
            AKLLFIIRI    +G+  V  K +K+L LLRL +   GVF+K+  AT+ +L  + PY+  G P+L S+++L  KR        +  + RI   DN+ ++E   G   G IC+EDLIHE+ T+G HFK  +N++ PFKL AP+ G
Sbjct:   92 AKLLFIIRIPDHTKGLK-VPSKARKVLHLLRLNRPNTGVFVKLTPATVPLLKLISPYIVAGKPSLNSIRKLFQKRACISVIDEETKEPRITKLDNNGVVEDKFGDDLGCICIEDLIHELATLGEHFKTVSNWILPFKLNAPVSG 234          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RLP7_ASHGO (Ribosome biogenesis protein RLP7 OS=Ashbya gossypii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.879e-22
Identity = 56/141 (39.72%), Postives = 83/141 (58.87%), Query Frame = 3
Query:  312 AKLLFIIRIRGINA--VDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGY------GKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQAPLGG 710
            A LLF++R+RG  A  +  K  ++L LLRL ++  GVF+++      +L  V PYV  G P+L S++ L+ KR        G+     + L DN ++E+ LG  G+IC+ED+IHEI T+G  F + N FL PFKL   + G
Sbjct:  110 ATLLFVVRVRGPAAAKIPRKAHRVLTLLRLAEVNTGVFVRLTAEVFPLLQVVAPYVVVGRPSLASIRALVQKRARVVHQRAGEAAPVEMVLNDNGVVEERLGDEGVICVEDIIHEIATMGEAFAKCNFFLLPFKLGREVSG 250          
BLAST of CF835834 vs. ExPASy Swiss-Prot
Match: RLP7_PICJA (Ribosome biogenesis protein RLP7 (Fragment) OS=Pichia jadinii GN=RLP7 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.255e-18
Identity = 55/155 (35.48%), Postives = 86/155 (55.48%), Query Frame = 3
Query:  318 LLFIIRIRG-INAVDP-KTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNK------QRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFKLQ------APLGGLKKKRNHYVE 740
            L  I+R  G + A  P K +K+LQLLRL +I +GVF+K+ +    +L  + PY     P+L++V++L+ KR    +        +++ L DN+++E+ LG  GIIC+ED+IHE   +   FK   +FL PF+L        PL  L+K      E
Sbjct:   32 LYLIVRTPGPVGAKIPSKVQKVLQLLRLNKINSGVFVKLTETVYPLLKLLSPYTVIXQPSLQTVRQLVQKRATVTVTHANDEEPRQVKLNDNNLVEEKLGDEGIICIEDIIHETSHLATTFKTVTHFLDPFELNKDVVGYGPLAKLRKLEKQEAE 186          
The following BLAST results are available for this feature:
BLAST of CF835834 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RLP7_YEAST2.371e-2546.76Ribosome biogenesis protein RLP7 OS=Saccharomyces ... [more]
RL7_ENCCU2.371e-2534.4360S ribosomal protein L7 OS=Encephalitozoon cunicu... [more]
RLP7_KLULA5.283e-2540.24Ribosome biogenesis protein RLP7 OS=Kluyveromyces ... [more]
RLP7_CANGA3.424e-2440.00Ribosome biogenesis protein RLP7 OS=Candida glabra... [more]
RLP7_DEBHA1.439e-2243.06Ribosome biogenesis protein RLP7 OS=Debaryomyces h... [more]
RLP7_ASHGO1.879e-2239.72Ribosome biogenesis protein RLP7 OS=Ashbya gossypi... [more]
RLP7_PICJA6.255e-1835.48Ribosome biogenesis protein RLP7 (Fragment) OS=Pic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P15_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835834 ID=CF835834; Name=CF835834; organism=Citrus sinensis; type=EST; length=760bp
CGAAGCCAGAACCCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAAGA
ACAAATTGAACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCAGA
GTCAGTGTTGAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGA
AGCAGGAGCTGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTC
ATTTACAACAGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAA
AGAACTCATTCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATG
TCAACCCAGAAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCAAT
GCTGTTGATCCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACA
GATTTTTAATGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGC
TGCACAGAGTTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGT
GTCAAAGAACTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAG
GATTGCTTTGACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATG
GAATTATCTGCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCT
CACTTCAAGGAGGCAAACAACTTCCTATGGCCCTTCAAGCTNCAGGCACC
ATTGGGTGGCCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATG
CAGGAAACCG
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