CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 49/129 (37.98%), Postives = 65/129 (50.39%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKH-GPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E  YPY   DG SC+FD + +AA  S    I+   +      V+  GP++V I A     Q Y  GV   P     YLDH  L VGYGS G       G+ FW++KN W  +WG+ GY K+   R
Sbjct:  188 GIDTEAAYPYEARDG-SCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSCSPSYLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGDAGYIKMSRNR 308          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = -1
Query:  266 GVEREKDYPYPG-ADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV------SCPYIWGKYLDHGGLFVGYGSS----------GFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIHTP 694
            G+  EKDYP+ G      C   K K  A + +F ++S  E  +A  L  HGP+ V I    +Q Y  GV      SC     + +DH  L VG+G              +  R    P+WI+KN WG +WGE GY+++  G    GV +   F   + +P
Sbjct:  206 GLASEKDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQKGVIKATPSSCD---PRQVDHSVLLVGFGKKKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGYFRLYRGNNTCGV-TKYPFTAQVDSP 361          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 45/125 (36.00%), Postives = 67/125 (53.60%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVS--NFRVISFEEDQMAANLVKHGPLAVGIKAVWM--QTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+E ++DYPY   D G C  DK+     V+   +  +  ++++     V H P++V I+A     Q Y  GV      G  LDHG + VGYGS+        G+ +WII+N WG NWG++GY K+
Sbjct:  211 GIETDQDYPYNANDLGLCNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTGTC-GISLDHGVVVVGYGSTS-------GEDYWIIRNSWGLNWGDSGYVKL 327          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVST (Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = -1
Query:  335 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYK 694
            GVE E DYPY G +  +C+   SK+A  +S+ ++    +E ++   L K+GP+AV I  V +  Y  G++        L+H  L VGYG            P+WI KN WG NWGENGY++
Sbjct:  205 GVEHEIDYPYQGIEY-ACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAIDCVDIIDYRSGIAT-VCNDNGLNHAVLLVGYGIEN-------DTPYWIFKNSWGSNWGENGYFR 316          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATO_HUMAN (Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 41/136 (30.15%), Postives = 67/136 (49.26%), Query Frame = -1
Query:  284 REKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF--EEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFV 685
            ++ +YP+   +G    F  S    ++  +    F  +ED+MA  L+  GPL V + AV  Q Y+GG+   +      +H  L  G+  +G         P+WI++N WG +WG +GY  + MG  V G+   VS +
Sbjct:  191 KDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHAVLITGFDKTG-------STPYWIVRNSWGSSWGVDGYAHVKMGSNVCGIADSVSSI 319          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 49/125 (39.20%), Postives = 67/125 (53.60%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVI-SFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGV-SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ EK YPY G D  SC F+K+ I A  + F  I   +E++M   +   GP++V I A     Q Y  GV + P    + LDHG L VGYG+         G  +W++KN WG  WGE GY K+
Sbjct:  203 GIDTEKSYPYEGIDD-SCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVGYGTDE------SGMDYWLVKNSWGTTWGEQGYIKM 320          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATR_MOUSE (Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 45/124 (36.29%), Postives = 62/124 (50.00%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+E E  YPY G DG  C+++     A ++ F  +   ED + A +   GP+  GI A     + Y GG+   P      + HG L VGYG  G   I   G  +W+IKN WG+ WG  GY K+
Sbjct:  196 GLESEATYPYEGKDG-PCRYNPKNSKAEITGFVSLPQSEDILMAAVATIGPITAGIDASHESFKNYKGGIYHEPNCSSDTVTHGVLVVGYGFKG---IETDGNHYWLIKNSWGKRWGIRGYMKL 315          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 44/133 (33.08%), Postives = 66/133 (49.62%), Query Frame = -1
Query:  299 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDS 694
            G++ E DYPY  A+ G C+ + +K    V   +R I+  E+++   L   GP+ V I A  +  Y  G+   Y     L+H  L VGY           G PFWI+KN WG +WGE GY+++       G+ +
Sbjct:  192 GIQAESDYPYE-ANNGDCRANAAKFVVKVKKCYRYITVFEEKLKDLLRSVGPIPVAIDASDIVNYKRGIM-KYCANHGLNHAVLLVGYAVEN-------GVPFWILKNTWGADWGEQGYFRVQQNINACGIQN 315          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 47/142 (33.10%), Postives = 69/142 (48.59%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKA-----VWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G+  E  YPY G DG  CK+  SK  A V +   I+  +E+ M   +  H P++   +      ++ +      SC     K ++H  L VGYG         KG P+WI+KN WG NWG  GY+ I  G+ + G+ +  SF
Sbjct:  198 GIMGEDTYPYRGQDG-DCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDK-VNHAVLAVGYGEE-------KGIPYWIVKNSWGPNWGMKGYFLIERGKNMCGLAACASF 330          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVCD (Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 45/133 (33.83%), Postives = 65/133 (48.87%), Query Frame = -1
Query:  299 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDS 694
            G++ E DYPY  A+ G C+ + +K    V   +R +   E+++   L   GPL V I A  +  Y  GV   Y     L+H  L VGY           G PFWI+KN WG +WGE GY+++       G+ +
Sbjct:  192 GIQAENDYPYE-ANNGDCRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAIDASDIVNYKRGV-IRYCANHGLNHAVLLVGYAVEN-------GVPFWILKNTWGTDWGEQGYFRVQQNINACGIQN 315          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CYSP2_HOMAM2.758e-1437.98Digestive cysteine proteinase 2 OS=Homarus america... [more]
CATW_MOUSE3.603e-1431.88Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CPR1_ARATH4.705e-1436.00Probable cysteine proteinase At3g19400 OS=Arabidop... [more]
CATV_NPVST4.705e-1438.02Viral cathepsin OS=Spodoptera litura multicapsid n... [more]
CATO_HUMAN4.705e-1430.15Cathepsin O OS=Homo sapiens GN=CTSO PE=1 SV=1[more]
CATL_SARPE4.705e-1439.20Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATR_MOUSE1.369e-1336.29Cathepsin R OS=Mus musculus GN=Ctsr PE=2 SV=1[more]
CATV_NPVCF1.788e-1333.08Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATH_BOVIN1.788e-1333.10Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATV_NPVCD3.050e-1333.83Viral cathepsin OS=Choristoneura fumiferana defect... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
back to top