CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVAP (Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 44/131 (33.59%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  305 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGV 694
            G++ E DYPY  A+ G C+ + +K    V   +R ++  E+++   L   GP+ V I A  +  Y  G+   Y     L+H  L VGYG          G PFWI+KN WG +WGE GY+++       G+
Sbjct:  192 GIQAENDYPYE-ANNGPCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAIDASDIVGYKRGI-IRYCENHGLNHAVLLVGYGVEN-------GIPFWILKNTWGADWGEQGYFRVQQNINACGI 313          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_FELCA (Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.050e-13
Identity = 45/128 (35.16%), Postives = 68/128 (53.12%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E+ YPY  A G SCK+      A V+++  I  +E+++   L   GP++  I A     + Y  G+   P    + +DHG L VGYG+ G      + K +WIIKN WG +WG +GY K+   R
Sbjct:   16 GLDSEESYPYH-AQGDSCKYRPENSVANVTDYWDIPSKENELMITLAAVGPISAAIDASLDTFRFYKEGIYYDPSCSSEDVDHGVLVVGYGADG---TETENKKYWIIKNSWGTDWGMDGYIKMAKDR 139          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 47/125 (37.60%), Postives = 63/125 (50.40%), Query Frame = -1
Query:  323 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG 694
            GVE+E DYPY  A    C     K A  V N +R +   E+++   L   GP+A+ + AV +  Y GGV   +     L+H  L VGYG            P+W IKN WG ++GENGY +I  G
Sbjct:  205 GVEQEYDYPYK-AVRLPCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGV-ISFCENNGLNHAVLLVGYGIEN-------NVPYWTIKNSWGSDYGENGYVRIRRG 320          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 46/128 (35.94%), Postives = 65/128 (50.78%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E+ YPY   DG SCK+      A  + F  I  +E  +   +   GP++V + A    +Q Y  G+   P    K LDHG L VGYG  G    + K   +W++KN WG+ WG +GY KI   R
Sbjct:  195 GLDSEESYPYEAKDG-SCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDK---YWLVKNSWGKEWGMDGYIKIAKDR 318          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: ALEUL_ARATH (Thiol protease aleurain-like OS=Arabidopsis thaliana GN=At3g45310 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 50/143 (34.97%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVS---NFRVISFEEDQMAANLVKHGPLAVGIKAVW-MQTYIGGVSCPYIWGKY---LDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G++ E+ YPY G DGG CKF    I   V    N  + + +E + A  LV+  P++V  + V   + Y  GV      G     ++H  L VGYG     P       +W+IKN WG  WG+NGY+K+ MG+ + GV +  S+
Sbjct:  222 GLDTEEAYPYTGKDGG-CKFSAKNIGVQVRDSVNITLGAEDELKHAVGLVR--PVSVAFEVVHEFRFYKKGVFTSNTCGNTPMDVNHAVLAVGYGVEDDVP-------YWLIKNSWGGEWGDNGYFKMEMGKNMCGVATCSSY 354          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 45/129 (34.88%), Postives = 64/129 (49.61%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKH-GPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            GV+ E  YPY   D  +C+F+ + I A  + +  I+   +       +  GP++V I A     Q+Y  GV   P      LDH  L VGYGS G       G+ FW++KN W  +WGE+GY K+   R
Sbjct:  187 GVDTESSYPYEARDN-TCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLDHAVLAVGYGSEG-------GQDFWLVKNSWATSWGESGYIKMARNR 307          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = -1
Query:  323 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG 694
            GVE+E DY Y  A+   C     K A  V N +R +   E+++   L   GP+A+ + AV +  Y GG+   +     L+H  L VGYG            P+WIIKN WG ++GE+GY ++  G
Sbjct:  205 GVEQEFDYSYK-AERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVDAVDLTDYYGGI-VSFCENNGLNHAVLLVGYGVEN-------NVPYWIIKNSWGSDYGEDGYVRVRRG 320          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATQ_RAT (Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G+E E  YPY   +G  C+++    +A ++ F V+   ED +   +   GP+A G+  +    + Y  GV        Y++H  L VGYG  G       G  +W+IKN WG+ WG  GY KI   R
Sbjct:  206 GLEAEATYPYERKEG-VCRYNPKNSSAKITGFVVLPESEDVLMDAVATKGPIATGVHVISSSFRFYQKGVYHEPKCSSYVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGKRWGLRGYMKIAKDR 328          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_MOUSE (Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.159e-12
Identity = 46/128 (35.94%), Postives = 63/128 (49.22%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E+ YPY   DG SCK+      A  + F  I  +E  +   +   GP++V + A    +Q Y  G+   P    K LDHG L VGYG  G    + K   +W++KN WG  WG  GY KI   R
Sbjct:  195 GLDSEESYPYEAKDG-SCKYRAEFAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGVLLVGYGYEGTDSNKNK---YWLVKNSWGSEWGMEGYIKIAKDR 318          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVLD (Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 42/125 (33.60%), Postives = 65/125 (52.00%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSK--IAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV--SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            GV+ E DYP+ G +   C  D+ +  + + V  +R +   E+++   L   GP+ + I A  +  Y  GV  SC       L+H  L VGYG          G P+W+ KN WG++WGENGY+++
Sbjct:  223 GVQTELDYPFVGRNR-RCGLDRHRPYVVSLVGCYRYVMVNEEKLKDLLRAVGPIPMAIDAADIVNYYRGVISSCE---NNGLNHAVLLVGYGVEN-------GVPYWVFKNTWGDDWGENGYFRV 336          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CATV_NPVAP3.050e-1333.59Viral cathepsin OS=Antheraea pernyi nuclear polyhe... [more]
CATL1_FELCA3.050e-1335.16Cathepsin L1 (Fragment) OS=Felis catus GN=CTSL1 PE... [more]
CATV_NPVMC3.983e-1337.60Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
CATL1_RAT8.874e-1335.94Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
ALEUL_ARATH8.874e-1334.97Thiol protease aleurain-like OS=Arabidopsis thalia... [more]
CYSP1_HOMAM1.159e-1234.88Digestive cysteine proteinase 1 OS=Homarus america... [more]
CATV_NPVSE1.159e-1235.20Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATQ_RAT1.159e-1233.07Cathepsin Q OS=Rattus norvegicus GN=Ctsq PE=2 SV=1[more]
CATL1_MOUSE1.159e-1235.94Cathepsin L1 OS=Mus musculus GN=Ctsl1 PE=1 SV=2[more]
CATV_NPVLD1.514e-1233.60Viral cathepsin OS=Lymantria dispar multicapsid nu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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