CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVHZ (Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV--SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            GVE E DYPY G++   C  D  KIA  +++ F+    +E+++   +   GP+A+ + A+ +  Y  G+   C +I+   L+H  L +G+G            P+WIIKN WGE+WGENG+ ++
Sbjct:  235 GVETEADYPYQGSEQ-MCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGILNQC-HIYD--LNHAVLLIGWGIEN-------NVPYWIIKNSWGEDWGENGFLRV 347          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVAC (Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 42/142 (29.58%), Postives = 71/142 (50.00%), Query Frame = -1
Query:  272 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIH 694
            GV+ E DYPY  AD  +C+ + +K    V + +R I+  E+++   L   GP+ + I A  +  Y  G+   Y +   L+H  L VGYG            P+W  KN WG +WGE+G++++       G+ + ++    I+
Sbjct:  191 GVQLESDYPYE-ADNNNCRMNSNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVNYKQGI-IKYCFNSGLNHAVLLVGYGVEN-------NIPYWTFKNTWGTDWGEDGFFRVQQNINACGMRNELASTAVIY 323          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = -1
Query:  317 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVI-SFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGV-SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRK 694
            G++ EK YPY   D  SC F+K  + A    F  I   +E +MA  +   GP++V I A     Q Y  GV + P    + LDHG L VG+G+         G+ +W++KN WG  WG+ G+ K+   ++
Sbjct:  235 GIDTEKSYPYEAIDD-SCHFNKGTVGATDRGFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDE------SGEDYWLVKNSWGTTWGDKGFIKMLRNKE 357          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_BOVIN (Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 47/124 (37.90%), Postives = 59/124 (47.58%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKA--VWMQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E+ YPY   D  SC +     AA  + F  I   E  +   +   GP++V I A     Q Y  G+   P    K LDHG L VGYG  G      K   FWI+KN WG  WG NGY K+
Sbjct:  195 GLDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKM 315          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP3_SOLLC (Cysteine proteinase 3 OS=Solanum lycopersicum GN=CYP-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 46/141 (32.62%), Postives = 73/141 (51.77%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAV-SNFRVISFEEDQMAANLVKHGPLAVGIKAV-WMQTYIGGVSCPYIWGKY---LDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G++ E+ YPY G +G  CKF ++ I   V S+  +    E ++   +    P++V  + V   + Y  GV      G     ++H  L VGYG          G P+W+IKN WG +WGE+GY+K+ MG+ + GV +  S+
Sbjct:  220 GLDTEEAYPYTGKNG-ICKFSQANIGVKVISSVNITLGAEYELKYAVALVRPVSVAFEVVKGFKQYKSGVYASTECGDTPMDVNHAVLAVGYGVEN-------GTPYWLIKNSWGADWGEDGYFKMEMGKNMCGVATCASY 352          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP2_DICDI (Cysteine proteinase 2 OS=Dictyostelium discoideum GN=cprB PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 48/159 (30.19%), Postives = 65/159 (40.88%), Query Frame = -1
Query:  317 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSG------------------------------FAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRK 694
            G++ E  YPY    G +C F+KS I A +  +  I+   +    N  +HGP++V I A     Q Y  G+   P      LDHG L VGYG  G                                 +R K   +WI+KN WG +WG  GY  +   RK
Sbjct:  204 GIDTESSYPYTAETGSTCLFNKSDIGATIKGYVNITAGSEISLENGAQHGPVSVAIDASHNSFQLYTSGIYYEPKCSPTELDHGVLVVGYGVQGKDDEGPVLNRKQTIVIHKNEDNKVESSDDSSDSVRPKANNYWIVKNSWGTSWGIKGYILMSKDRK 362          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVEP (Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = -1
Query:  272 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNF-RVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIH 694
            GV+ E DYPY  ++   C+ D +K    V    R I+  E+++   L   GP+ V I A  +  Y  G+   Y     L+H  L VGYG            P+WI+KN WG +WGE G++KI       G+ + ++    I+
Sbjct:  191 GVQIENDYPYESSNN-YCRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAIDASDILNYEQGI-IKYCANNGLNHAVLLVGYGVEN-------NVPYWILKNSWGTDWGEQGFFKIQQNVNACGIKNELASTAEIN 323          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATLL_PHACE (Cathepsin L-like proteinase OS=Phaedon cochleariae PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 44/141 (31.21%), Postives = 70/141 (49.65%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV----SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR-KVWGVDSMVSF 694
            G+E + DYPY G +      DKS+    ++ ++ ++  E  +   +   GP++  +    M++Y GG+    SC    G  L HG   VGYG          G+ +WIIKN WG +WGE+GY ++        GV+ M S+
Sbjct:  190 GLESDADYPYSGKEDKCKANDKSRSVVELTGYKKVTASETSLKEAVGTIGPISAVVFGKPMKSYGGGIFDDSSC---LGDNLHHGVNVVGYGIEN-------GQKYWIIKNTWGADWGESGYIRLIRDTDHSCGVEKMASY 320          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+  E+ YPY G  G  C++     AA V +F  I   E+ +   + K GP++V + A     Q Y  G+   P     +L+H  L VGYG  G       G  FW++KN WGE WG  GY K+
Sbjct:  195 GLATEESYPYRG-QGRECRYHAENSAANVRDFVQIPGSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQCKRVHLNHAVLVVGYGFEGEES---DGNSFWLVKNSWGEEWGMKGYMKL 314          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 41/124 (33.06%), Postives = 62/124 (50.00%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKI-AAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E DYPY   DG  C  ++      ++  F  +   +++     V H P++V I+A     Q Y  GV      G  LDHG + VGYG+         GK +WI++N WG  WGE+GY ++
Sbjct:  222 GIDTEDDYPYKAVDG-KCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGRC-GTSLDHGVVAVGYGTDN-------GKDYWIVRNSWGPKWGESGYVRM 336          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CATV_NPVHZ1.514e-1234.68Viral cathepsin OS=Heliothis zea nuclear polyhedro... [more]
CATV_NPVAC1.514e-1229.58Viral cathepsin OS=Autographa californica nuclear ... [more]
CATL_DROME1.514e-1234.62Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]
CATL1_BOVIN1.514e-1237.90Cathepsin L1 OS=Bos taurus GN=CTSL1 PE=1 SV=3[more]
CYSP3_SOLLC1.977e-1232.62Cysteine proteinase 3 OS=Solanum lycopersicum GN=C... [more]
CYSP2_DICDI1.977e-1230.19Cysteine proteinase 2 OS=Dictyostelium discoideum ... [more]
CATV_NPVEP1.977e-1231.69Viral cathepsin OS=Epiphyas postvittana nucleopoly... [more]
CATLL_PHACE1.977e-1231.21Cathepsin L-like proteinase OS=Phaedon cochleariae... [more]
TEST2_RAT2.582e-1235.48Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
ORYB_ORYSJ2.582e-1233.06Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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