CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 47/149 (31.54%), Postives = 68/149 (45.64%), Query Frame = -1
Query:  305 GVEREKDYPYPG-ADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV------SC-PYIWGKYLDHGGLFVGYGSS-----------GFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGV 694
            G+  EKDYP+ G      C   K    A + +F ++   E ++A  L   GP+ V I    ++ Y  GV      SC P++    +DH  L VG+G S           G  P   +  PFWI+KN WG  WG  GY+++  G    G+
Sbjct:  208 GLASEKDYPFQGQVKPHRCLAKKRTKVAWIQDFIMLPDNEQKIAWYLATQGPITVTINMKLLKLYKKGVIEATPTSCDPFL----VDHSVLLVGFGKSESVADRRAGAAGAQPQSRRSIPFWILKNSWGTKWGXGGYFRLYRGNNTCGI 352          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVRO (Viral cathepsin OS=Rachiplusia ou multiple nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 42/142 (29.58%), Postives = 70/142 (49.30%), Query Frame = -1
Query:  272 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIH 694
            GV+ E DYPY  AD  +C+ + +K    V + +R I+  E+++   L   GP+ + I A  +  Y  G+   Y +   L+H  L VGYG            P+W  KN WG +WGE G++++       G+ + ++    I+
Sbjct:  191 GVQLESDYPYE-ADNNNCRMNTNKFLVQVKDCYRYITVYEEKLKDLLRLVGPIPMAIDAADIVNYKQGI-IKYCFNSGLNHAVLLVGYGVEN-------NIPYWTFKNTWGTDWGEEGFFRVQQNINACGMRNELASTAVIY 323          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_PIG (Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 47/124 (37.90%), Postives = 60/124 (48.39%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E+ YPY G +  SC +     AA  + F  I   E  +   +   GP++V I A     Q Y  G+   P    K LDHG L VGYG  G      K   FWI+KN WG  WG NGY K+
Sbjct:  195 GLDTEESYPYLGRETNSCTYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNSSK---FWIVKNSWGPEWGWNGYVKM 315          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: ALEU_ARATH (Thiol protease aleurain OS=Arabidopsis thaliana GN=ALEU PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.582e-12
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQM--AANLVKHGPLAVGIKAVW-MQTYIGGVSCPYIWGKY---LDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G++ EK YPY G D  +CKF    +   V N   I+   ED++  A  LV+  P+++  + +   + Y  GV      G     ++H  L VGYG          G P+W+IKN WG +WG+ GY+K+ MG+ + G+ +  S+
Sbjct:  222 GLDTEKAYPYTGKDE-TCKFSAENVGVQVLNSVNITLGAEDELKHAVGLVR--PVSIAFEVIHSFRLYKSGVYTDSHCGSTPMDVNHAVLAVGYGVED-------GVPYWLIKNSWGADWGDKGYFKMEMGKNMCGIATCASY 354          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 44/131 (33.59%), Postives = 64/131 (48.85%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWM--QTYIGGV----SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E  YPY   D  SC+FD + I A  +    +   E+ +   +   GP++V I A     Q Y  GV    +C      +LDHG L VGYG+          K +W++KN WG +WG+ GY K+   R
Sbjct:  187 GIDTESSYPYEAEDR-SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNCS---PTFLDHGVLAVGYGTEST-------KDYWLVKNSWGSSWGDAGYIKMSRNR 306          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATV_NPVBM (Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 42/142 (29.58%), Postives = 70/142 (49.30%), Query Frame = -1
Query:  272 GVEREKDYPYPGADGGSCKFDKSKIAAAVSN-FRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIH 694
            GV+ E DYPY  AD  +C+ + +K    V + +R I   E+++   L   GP+ + I A  +  Y  G+   Y +   L+H  L VGYG            P+W  KN WG +WGE+G++++       G+ + ++    I+
Sbjct:  191 GVQLESDYPYE-ADNNNCRMNSNKFLVQVKDCYRYIIVYEEKLKDLLPLVGPIPMAIDAADIVNYKQGI-IKYCFDSGLNHAVLLVGYGVEN-------NIPYWTFKNTWGTDWGEDGFFRVQQNINACGMRNELASTAVIY 323          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATS_CANFA (Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVWMQTYI--GGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E  YPY  A  G C++D  K AA  S +  + F  ED +   +   GP++V I A     ++   GV       + ++HG L VGYG+         GK +W++KN WG N+G+ GY ++
Sbjct:  197 GIDSEASYPYK-AMNGKCRYDSKKRAATCSKYTELPFGSEDALKEAVANKGPVSVAIDASHYSFFLYRSGVYYEPSCTQNVNHGVLVVGYGN-------LNGKDYWLVKNSWGLNFGDQGYIRM 312          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.372e-12
Identity = 46/130 (35.38%), Postives = 62/130 (47.69%), Query Frame = -1
Query:  317 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKH-GPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRK 694
            G++ E+ YPY   D   C++     AA  + F  I    ++     V   GP++V I A     Q Y  G+   P    + LDHG L VGYG  G       GK +WI+KN WGE WG+ GY  +   RK
Sbjct:   82 GIDSEESYPYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDAGHSSFQFYQSGIYYEPDCSSEDLDHGVLVVGYGFEG-------GKKYWIVKNSWGEKWGDKGYIYMAKDRK 204          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 44/124 (35.48%), Postives = 61/124 (49.19%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+  E+ YPY G  G  C++     AA V +F  I   E+ +   + K GP++V + A     Q Y  G+   P     +L+H  L VGYG  G       G  +W++KN WGE WG  GY KI
Sbjct:  195 GLATEESYPYIGP-GRKCRYHAENSAANVRDFVQIPGREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQCKRVHLNHAVLVVGYGFEGEES---DGNSYWLVKNSWGEEWGMKGYIKI 314          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_CANFA (Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 45/124 (36.29%), Postives = 59/124 (47.58%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWM--QTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E+ YPY G D  +C +     AA  + F  +   E  +   +   GP++V I A     Q Y  G+   P    K LDHG L VGYG  G          FWI+KN WG  WG NGY K+
Sbjct:  195 GLDSEESYPYLGRDTETCNYKPECSAANDTGFVDLPQREKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHGVLVVGYGFEGTD----SNNKFWIVKNSWGPEWGWNGYVKM 314          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CATW_FELCA2.582e-1231.54Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
CATV_NPVRO2.582e-1229.58Viral cathepsin OS=Rachiplusia ou multiple nucleop... [more]
CATL1_PIG2.582e-1237.90Cathepsin L1 OS=Sus scrofa GN=CTSL1 PE=2 SV=1[more]
ALEU_ARATH2.582e-1232.87Thiol protease aleurain OS=Arabidopsis thaliana GN... [more]
CYSP3_HOMAM3.372e-1233.59Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATV_NPVBM3.372e-1229.58Viral cathepsin OS=Bombyx mori nuclear polyhedrosi... [more]
CATS_CANFA3.372e-1233.06Cathepsin S OS=Canis familiaris GN=CTSS PE=2 SV=1[more]
CATL1_CHICK3.372e-1235.38Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
TEST2_MOUSE4.404e-1235.48Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATL1_CANFA4.404e-1236.29Cathepsin L1 OS=Canis familiaris GN=CTSL1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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