CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E+DYPY   DG      +S+   ++  F  +   ++      V H P++V I A     Q Y  GV      G  LDHG + VGYG+         G  +W ++N WG +WGENGY ++
Sbjct:  237 GLDTEEDYPYTAMDGKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGRC-GTNLDHGVVAVGYGTDAAT-----GAAYWTVRNSWGPDWGENGYIRM 353          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 45/140 (32.14%), Postives = 69/140 (49.29%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG-RKVWGVDSMVSF 694
            G+E E  YPY G DG  C++     +A ++++  +   E  +   +   GP++  I A     + Y GG+   P     +++H  L VGYGS G       G  +W+IKN WGE WG NGY +I        G+ S+ S+
Sbjct:  195 GLEAEATYPYEGKDG-PCRYRSENASANITDYVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFVNHAVLVVGYGSEGDVK---DGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASY 330          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP3_DICDI (Cysteine proteinase 3 OS=Dictyostelium discoideum GN=cprC PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 43/140 (30.71%), Postives = 69/140 (49.29%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR-KVWGVDSMVSF 694
            G+  E+ YPY       CKF +  +AA +++++ I   ++    N +   P++V I A     Q Y  GV   P    + LDHG L VG G+         G+ ++I+KN WG +WG NGY  +   +    G+ +M S+
Sbjct:  202 GLNSEEQYPYEMKVNDECKFQEGSVAAKITSYKEIEAGDENDLQNALLLNPVSVAIDASHNSFQLYTAGVYYEPACSSEDLDHGVLAVGMGTD-------NGEDYYIVKNSWGPSWGLNGYIHMARNKDNNCGISTMASY 334          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL2_BOVIN (Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 46/123 (37.40%), Postives = 58/123 (47.15%), Query Frame = -1
Query:  332 VEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKA--VWMQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 691
            ++ E+ YPY   D  SC +     AA  + F  I   E  +   +   GP++V I A     Q Y  G+   P    K LDHG L VGYG  G      K   FWI+KN WG  WG NGY K+
Sbjct:  196 LDSEESYPYLATDTNSCNYKPECSAANDTGFVDIPQREKALMKAVATVGPISVAIDAGHTSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEGTDSNNNK---FWIVKNSWGPEWGWNGYVKM 315          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP2_MAIZE (Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 46/143 (32.17%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAV-SNFRVISFEEDQM--AANLVKHGPLAVGIKAVW-MQTYIGGVSCPYIWGKY---LDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G++ E+ YPY G +G  CKF    +   V  +  +    ED++  A  LV+  P++V  + +   + Y  GV      G     ++H  L VGYG          G P+W+IKN WG +WG+ GY+K+ MG+ + GV +  S+
Sbjct:  224 GLDTEESYPYQGVNG-ICKFKNENVGVKVLDSVNITLGAEDELKDAVGLVR--PVSVAFEVITGFRLYKSGVYTSDHCGTTPMDVNHAVLAVGYGVED-------GVPYWLIKNSWGADWGDEGYFKMEMGKNMCGVATCASY 356          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 48/140 (34.29%), Postives = 66/140 (47.14%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSCPYIWGKYL-DHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR-KVWGVDSMVSF 694
            G+E E  YPY G DG  C++     +A ++ F  +   E  +   +   GP++  I A     + Y GGV        Y+ +H  L VGYG  G       G  +W+IKN WGE WG NG+ KI   R    G+ S  SF
Sbjct:  195 GLEAEATYPYEGKDG-PCRYHSENASANITGFVNLPPNELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSSYVVNHAVLVVGYGFEGNET---DGNNYWLIKNSWGEEWGINGFMKIAKDRNNHCGIASQASF 330          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: XCP2_ARATH (Xylem cysteine proteinase 2 OS=Arabidopsis thaliana GN=XCP2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 48/146 (32.88%), Postives = 71/146 (48.63%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKI-AAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGV---SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMG----RKVWGVDSMVSF 694
            G+ +E+DYPY   + G+C+  K +     ++  + +   +++     + H PL+V I A     Q Y GGV    C    G  LDHG   VGYGSS       KG  + I+KN WG  WGE GY ++         + G++ M SF
Sbjct:  218 GLRKEEDYPY-SMEEGTCEMQKDESETVTINGHQDVPTNDEKSLLKALAHQPLSVAIDASGREFQFYSGGVFDGRC----GVDLDHGVAAVGYGSS-------KGSDYIIVKNSWGPKWGEKGYIRLKRNTGKPEGLCGINKMASF 351          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 40/126 (31.75%), Postives = 61/126 (48.41%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGV---SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+  EKDYPY G  G    F K+    ++  +  +  +++      + + P++V I+A     Q Y  G+   SC    G  LDH  + VGYGS         G  +WI++N WG  WGE GY ++
Sbjct:  225 GLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGSC----GTNLDHAVVAVGYGSEN-------GVDYWIVRNSWGPRWGEEGYIRM 339          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWM--QTYIGGVSC-PYIWGKYLDHGGLFVGYGS-SGFAPIRFKGKP-----------FWIIKNFWGENWGENGYYKICMGR-KVWGVDSMVSF 694
            G++ E  YPY  A+ G C++      A +S+++ ++   +    + V   P++V I A     Q Y  G+   P    + LDHG L VGYGS SG +  +  G+            +WI+KN WG +WG  GY  +   R    G+ S  SF
Sbjct:  191 GIDTESSYPYK-AENGKCEYKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAIDASHQSFQLYTSGIYYEPECSSENLDHGVLAVGYGSGSGSSSGQSSGQSSGNLSASSSNEYWIVKNSWGTSWGIEGYILMSRNRDNNCGIASSASF 341          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CPR2_ARATH (Probable cysteine proteinase At3g43960 OS=Arabidopsis thaliana GN=At3g43960 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 40/126 (31.75%), Postives = 60/126 (47.62%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVS--NFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV---SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+  ++ Y Y G D  +CK  + K    V+     V+   ++      V + P++V I A  M  Y  GV   +C  +WG   DH  L VGYG+S           +W+I+N WG  WGE GY ++
Sbjct:  209 GIVSDEVYGYTGEDTAACKAIEMKTTRVVTINGHEVVPVNDEMSLKKAVAYQPISVMISAANMSDYKSGVYKGACSNLWG---DHNVLIVGYGTSS------DEGDYWLIRNSWGPEWGEGGYLRL 325          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CYSP1_ORYSJ5.752e-1232.52Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CATJ_MOUSE5.752e-1232.14Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CYSP3_DICDI7.512e-1230.71Cysteine proteinase 3 OS=Dictyostelium discoideum ... [more]
CATL2_BOVIN7.512e-1237.40Cathepsin L2 OS=Bos taurus GN=CTSL2 PE=2 SV=1[more]
CYSP2_MAIZE9.811e-1232.17Cysteine proteinase 2 OS=Zea mays GN=CCP2 PE=2 SV=... [more]
CATJ_RAT9.811e-1234.29Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
XCP2_ARATH1.281e-1132.88Xylem cysteine proteinase 2 OS=Arabidopsis thalian... [more]
GCP1_ARATH1.674e-1131.75Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP5_DICDI1.674e-1130.92Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CPR2_ARATH1.674e-1131.75Probable cysteine proteinase At3g43960 OS=Arabidop... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
back to top