CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 47/147 (31.97%), Postives = 67/147 (45.58%), Query Frame = -1
Query:  305 GVEREKDYPYPG-ADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVWMQTYIGGV--SCPYIWGKYL-DHGGLFVGYGS-------------SGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGV 694
            G+  EKDYP+ G      C   K +  A + +F ++   E ++A  L  +GP+ V I    +Q Y  GV  + P      L DH  L VG+GS             S   P      P+WI+KN WG  WGE GY+++  G    G+
Sbjct:  208 GLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTINMKPLQLYRKGVIKATPTTCDPQLVDHSVLLVGFGSVKSEEGIWAETVSSQSQPQPPHPTPYWILKNSWGAQWGEKGYFRLHRGSNTCGI 354          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATS_SAIBB (Cathepsin S OS=Saimiri boliviensis boliviensis GN=CTSS PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVWMQTYI--GGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E  YPY   D   C++D    AA  S +  + +  ED +   +   GP+ VG+ A     ++   GV       + ++HG L +GYG          GK +W++KN WG N+GE GY ++   +
Sbjct:  196 GIDSEASYPYKATDQ-KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVCVGVDASHPSFFLYRSGVYYDPACTQKVNHGVLVIGYGD-------LNGKEYWLVKNSWGSNFGEQGYIRMARNK 315          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVW-MQTYIGGV----SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G+  E  YPY G +G  CKF+  K  A V N   I+  +E  M   +  + P++   +       Y  GV    SC     K ++H  L VGYG          G  +WI+KN WG NWG NGY+ I  G+ + G+ +  S+
Sbjct:  196 GIMGEDSYPYIGKNG-QCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDK-VNHAVLAVGYGEQN-------GLLYWIVKNSWGSNWGNNGYFLIERGKNMCGLAACASY 328          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 68.9366 bits (167), Expect = 2.855e-11
Identity = 45/142 (31.69%), Postives = 67/142 (47.18%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVIS-FEEDQMAANLVKHGPLAVGIKAVW-MQTYIGGV----SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G+  E  YPY G DG  CKF   K    V +   I+ ++E+ M   +  + P++   +       Y  G+    SC     K ++H  L VGYG          G P+WI+KN WG  WG NGY+ I  G+ + G+ +  S+
Sbjct:  198 GIMGEDTYPYQGKDG-YCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVSFAFEVTQDFMMYRTGIYSSTSCHKTPDK-VNHAVLAVGYGEKN-------GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 330          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CRUST_PANBO (Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 44/129 (34.11%), Postives = 63/129 (48.84%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNF-RVISFEEDQMAANLVKHGPLAVGIKAVWMQ--TYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ E  YPY   D  +C++D   I A VS++    S +E  +   +   GP++V I A      +Y GGV   P     Y +H    VGYG+         G  +WI+KN WG  WGE+GY K+   R
Sbjct:  187 GIDTESSYPYKAIDD-NCRYDAGNIGATVSSYVEPASGDESALQHAVQNEGPVSVCIDAGQSSFGSYGGGVYYEPNCDSWYANHAVTAVGYGTDA------NGGDYWIVKNSWGAWWGESGYIKMARNR 308          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATL1_SHEEP (Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 45/124 (36.29%), Postives = 57/124 (45.97%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSC-PYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E+ YPY   D  SC +     AA  + F  I   E  +   +   GP++V I A     Q Y  G+   P    K LDHG L VGYG  G          FWI+KN WG  WG  GY K+
Sbjct:   82 GLDSEESYPYEATDT-SCNYKPEYSAAKDTGFVDIPQREKALMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHGVLVVGYGFEG------TNNKFWIVKNSWGPEWGNKGYVKM 198          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATH_MOUSE (Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.728e-11
Identity = 47/142 (33.10%), Postives = 67/142 (47.18%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVW-MQTYIGGV----SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G+  E  YPY G D  SC+F+  K  A V N   I+  +E  M   +  + P++   +       Y  GV    SC     K ++H  L VGYG          G  +WI+KN WG  WGENGY+ I  G+ + G+ +  S+
Sbjct:  196 GIMEEDSYPYIGKDS-SCRFNPQKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFLMYKSGVYSSKSCHKTPDK-VNHAVLAVGYGEQN-------GLLYWIVKNSWGSQWGENGYFLIERGKNMCGLAACASY 328          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 44/143 (30.77%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVS---NFRVISFEEDQMAANLVKHGPLAVGIKAV-WMQTYIGGVSCPYIWGKY---LDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G++ E+ YPY G +G  C +    +   V    N  + + +E + A  LV+  P++V  + +   + Y  GV      G     ++H  L VGYG          G P+W+IKN WG +WG+NGY+K+ MG+ + G+ +  S+
Sbjct:  226 GLDTEEAYPYTGVNG-ICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCGTSPMDVNHAVLAVGYGVEN-------GVPYWLIKNSWGADWGDNGYFKMEMGKNMCGIATCASY 358          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 38/128 (29.69%), Postives = 63/128 (49.22%), Query Frame = -1
Query:  320 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVWMQTYI--GGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGR 694
            G++ +  YPY   D   C++D    AA  S +  + +  ED +   +   GP++VG+ A     ++   GV       + ++HG L VGYG          GK +W++KN WG N+GE GY ++   +
Sbjct:  197 GIDSDASYPYKAMDQ-KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQNVNHGVLVVGYGD-------LNGKEYWLVKNSWGHNFGEEGYIRMARNK 316          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATC_MOUSE (Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 51/155 (32.90%), Postives = 75/155 (48.39%), Query Frame = -1
Query:  266 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVIS-----FEEDQMAANLVKHGPLAVGIKAV--WMQTYIG-----GVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSFVGAIHTP 694
            GV  E  +PY   D   CK  ++ +    S++  +        E  M   LVKHGP+AV  +    ++  + G     G+S P+   +  +H  L VGYG     P+   G  +WIIKN WG NWGE+GY++I  G     ++S+   V AI  P
Sbjct:  314 GVVEESCFPYTAKDS-PCKPRENCLRYYSSDYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGRD---PVT--GIEYWIIKNSWGSNWGESGYFRIRRGTDECAIESIA--VAAIPIP 460          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
CATW_HUMAN1.674e-1131.97Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CATS_SAIBB1.674e-1129.69Cathepsin S OS=Saimiri boliviensis boliviensis GN=... [more]
CATH_RAT2.855e-1133.10Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_HUMAN2.855e-1131.69Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CRUST_PANBO3.728e-1134.11Crustapain OS=Pandalus borealis GN=Cys PE=1 SV=1[more]
CATL1_SHEEP3.728e-1136.29Cathepsin L1 OS=Ovis aries GN=CTSL PE=1 SV=1[more]
CATH_MOUSE3.728e-1133.10Cathepsin H OS=Mus musculus GN=Ctsh PE=2 SV=1[more]
ORYC_ORYSJ4.869e-1130.77Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATS_HUMAN4.869e-1129.69Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATC_MOUSE4.869e-1132.90Dipeptidyl-peptidase 1 OS=Mus musculus GN=Ctsc PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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