CF835836

Overview
NameCF835836
Unique NameCF835836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: ALEU_HORVU (Thiol protease aleurain OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVS---NFRVISFEEDQMAANLVKHGPLAVGIKAV-WMQTYIGGVSCPYIWGKYLD---HGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G++ E+ YPY G +G  C +     A  V    N  + + +E + A  LV+  P++V  + +   + Y  GV      G   D   H  L VGYG          G P+W+IKN WG +WG+NGY+K+ MG+ +  + +  S+
Sbjct:  225 GIDTEESYPYKGVNG-VCHYKAENAAVQVLDSVNITLNAEDELKNAVGLVR--PVSVAFQVIDGFRQYKSGVYTSDHCGTTPDDVNHAVLAVGYGVEN-------GVPYWLIKNSWGADWGDNGYFKMEMGKNMCAIATCASY 357          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: XCP1_ARATH (Xylem cysteine proteinase 1 OS=Arabidopsis thaliana GN=XCP1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIA-AAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGV---SCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G+ +E DYPY   + G C+  K  +    +S +  +   +D+     + H P++V I+A     Q Y GGV    C    G  LDHG   VGYGSS       KG  + I+KN WG  WGE G+ ++
Sbjct:  217 GLHKEDDYPYL-MEEGICQEQKEDVERVTISGYEDVPENDDESLVKALAHQPVSVAIEASGRDFQFYKGGVFNGKC----GTDLDHGVAAVGYGSS-------KGSDYVIVKNSWGPRWGEKGFIRM 331          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 38/123 (30.89%), Postives = 61/123 (49.59%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISFEEDQMAANLVKHGPLAVGIKAVW--MQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E DYPY G D       K+     + ++  ++   +      V + P++V I+A     Q Y  G+      G  LDHG   VGYG+         GK +WI++N WG++WGE+GY ++
Sbjct:  209 GIDTEDDYPYKGKDERCDVNRKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGKC-GTALDHGVAAVGYGTEN-------GKDYWIVRNSWGKSWGESGYVRM 323          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 41/130 (31.54%), Postives = 63/130 (48.46%), Query Frame = -1
Query:  317 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVWMQTYI---GGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRK 694
            G+E +  YPY   D   C ++    AA  S +  + F +ED +   +   GP++VGI A     +    G    P   G  ++HG L VGYG+         GK +W++KN WG N+G+ GY ++    K
Sbjct:  206 GIEADASYPYKATDE-KCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGIDASHSSFFFYKSGVYDDPSCTGN-VNHGVLVVGYGT-------LDGKDYWLVKNSWGLNFGDQGYIRMARNNK 326          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATH_PIG (Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 43/142 (30.28%), Postives = 66/142 (46.48%), Query Frame = -1
Query:  287 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKA-----VWMQTYIGGVSCPYIWGKYLDHGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKICMGRKVWGVDSMVSF 694
            G+  E  YPY G D   CKF   K  A V +   I+  +E+ M   +  + P++   +      ++ +      SC     K ++H  L VGYG          G P+WI+KN WG  WG NGY+ I  G+ + G+ +  S+
Sbjct:  198 GIMGEDTYPYKGQDD-HCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDK-VNHAVLAVGYGEEN-------GIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASY 330          
BLAST of CF835836 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.306e-11
Identity = 41/130 (31.54%), Postives = 63/130 (48.46%), Query Frame = -1
Query:  332 GVEREKDYPYPGADGGSCKFDKSKIAAAVSNFRVISF-EEDQMAANLVKHGPLAVGIKAVWMQTYIGGVSCPYIWGKYLD--------HGGLFVGYGSSGFAPIRFKGKPFWIIKNFWGENWGENGYYKI 694
            G++ E  YPY   DG  C++D    AA  S +  + F  E+ +   +   GP++VGI A     ++      Y  G Y D        HG L VGYG+         GK +W++KN WG ++G+ GY ++
Sbjct:  197 GIDSEASYPYKAMDG-KCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGIDASHSSFFL------YKTGVYYDPSCTQNVNHGVLVVGYGN-------LDGKDYWLVKNSWGLHFGDQGYIRM 312          
The following BLAST results are available for this feature:
BLAST of CF835836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
ALEU_HORVU4.869e-1131.47Thiol protease aleurain OS=Hordeum vulgare PE=2 SV... [more]
XCP1_ARATH6.359e-1134.65Xylem cysteine proteinase 1 OS=Arabidopsis thalian... [more]
ORYA_ORYSJ6.359e-1130.89Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CATS_MOUSE6.359e-1131.54Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATH_PIG6.359e-1130.28Cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1[more]
CATS_BOVIN8.306e-1131.54Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835836 ID=CF835836; Name=CF835836; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTTTTTTTTTTCTTAAAAAAAAAAAATATTAATACCCTCTTCAA
TAACAATTCTGGAGCATGGTTAACTATAAAATAAATAAATATTACTTTCT
GACATGACATTTGCTTAAATATTACAAAAGCATAAAAAGTTCTTGCCTCC
CCCCAGGCATGTAGGCATCGTTATAATTGCAAACGGATTTTTAAAAGGAT
TTCCTATAATATCTAGGGACAAAAGCTCCCCTTGCCTAACACAACCCCCA
TAATGTCTAGCTTGAGGGTGTATGGATAGCACCTACAAATGAAACCATGG
AGTCCACCCCCCAAACTTTGCGACCCATGCAAATCTTATAATATCCATTC
TCCCCCCAGTTCTCTCCCCAGAAGTTCTTTATGATCCAAAAAGGCTTCCC
CTTGAATCTGATCGGGGCGAAACCTGAGGATCCATACCCCACAAAAAGCC
CTCCATGATCCAAATACTTCCCCCAAATGTATGGGCATGAAACCCCCCCA
ATATATGTTTGCATCCAAACGGCTTTGATACCCACTGCCAAAGGGCCATG
TTTCACCAAATTTGCAGCCATTTGATCTTCCTCAAAGGAAATAACCCTGA
AATTAGATACCGCTGCCGCAATTTTGCTTTTGTCAAATTTGCAGGAACCC
CCGTCGGCCCCAGGGTAAGGGTAATCCTTTTCTCGCTCAACCCC
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