CF835837

Overview
NameCF835837
Unique NameCF835837
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7034 contig Csv1_Contig7034:253..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CYSP2_HORVU (Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 91/248 (36.69%), Postives = 127/248 (51.21%), Query Frame = 3
Query:   66 EHDYRFRVFKANLR--RAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAP-----ILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPY---TGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDH 773
            E   RF  FK+N     +  ++   P  +H + +F D+  +EFR  F+G  RR   P+     P      L  +DLP   DWR  GAVTGVKDQG CGSCW+FS   ++EG + + TG LVSLSEQ+L+DCD         + + GC GGLM++AFEYI   GG+  E  YPY    GT   +     S +   +     + ++ ++  A  V + P++V + A       Y  GV     CG  LDH
Sbjct:   61 EKHRRFGTFKSNAHFIHSHNKRGDHPYRLH-LNRFGDMDQAEFRATFVGDLRR-DTPSKPPSVPGFMYAALNVSDLPPSVDWRQKGAVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCD--------TADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE-CGTELDH 297          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATH_RAT (Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 89/255 (34.90%), Postives = 136/255 (53.33%), Query Frame = 3
Query:   18 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHG-AVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSN-FSVISSDEDQMAANLVKHGPLAVGINAVW-MQTYIGGVSCPYICGKYLD 770
            F+ +  +  KTY+++E + +R +VF  N R+ +     + T   G+ +FSD++ +E + ++L    +      A K+  L  T   P+  DWR  G  V+ VK+QGACGSCW+FS TGALE A  +++G++++L+EQQLVDC    +       + GC GGL + AFEYIL   G+  E  YPY G + G CKF+  K  A V N  ++  +DE  M   +  + P++           Y  GV     C K  D
Sbjct:   33 FTSWMKQHQKTYSSRE-YSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKHKYLWSEPQ---NCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKN-GQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPD 275          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATH_HUMAN (Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4)

HSP 1 Score: 137.887 bits (346), Expect = 5.971e-32
Identity = 87/228 (38.16%), Postives = 127/228 (55.70%), Query Frame = 3
Query:   18 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPLA 692
            F  + SK  KTY+T+E H +R + F +N R+       + T    + +FSD++ +E + ++L    +      A K+  L  T   P   DWR  G  V+ VK+QGACGSCW+FS TGALE A  ++TG+++SL+EQQLVDC  + +       + GC GGL + AFEYIL   G+  E  YPY G D G CKF   K    V + + I+  DE+ M   +  + P++
Sbjct:   35 FKSWMSKHRKTYSTEEYH-HRLQTFASNWRKINAHNNGNHTFKMALNQFSDMSFAEIKHKYLWSEPQ---NCSATKSNYLRGTGPYPPSVDWRKKGNFVSPVKNQGACGSCWTFSTTGALESAIAIATGKMLSLAEQQLVDCAQDFN-------NHGCQGGLPSQAFEYILYNKGIMGEDTYPYQGKD-GYCKFQPGKAIGFVKDVANITIYDEEAMVEAVALYNPVS 250          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.799e-32
Identity = 92/246 (37.40%), Postives = 123/246 (50.00%), Query Frame = 3
Query:   63 EEHDYRFRVFKANLRRAKR-RQLLDPTAVHGVTKFSDLTPSEFRRQFLGL---NRRLRLPADAQKAPILPTN--DLPT-DFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINA--VWMQTYIGGVSCPYICGKYLDH 773
            +E + RF VFK N++      Q  D      + KF D+T  EFR ++ G    + R +          +  N   LP    DWR  GAVTGVKDQG CGSCW+FS   ++EG + + TGELVSLSEQ+LVDCD         S + GCNGGLM+ AFE+I K  G+  E  YPY   DG       +    ++     + ++ +      V + P++V I A     Q Y  GV     CG  LDH
Sbjct:   54 DEKNRRFNVFKENVKFIHEFNQKKDAPYKLALNKFGDMTNQEFRSKYAGSKIQHHRSQRGIQKNTGSFMYENVGSLPAASIDWRAKGAVTGVKDQGQCGSCWAFSTIASVEGINQIKTGELVSLSEQELVDCD--------TSYNEGCNGGLMDYAFEFIQK-NGITTEDSYPYAEQDGTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGR-CGTELDH 289          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.799e-32
Identity = 95/256 (37.11%), Postives = 135/256 (52.73%), Query Frame = 3
Query:   18 FSLFKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILP-TNDLPTDFDWRDHGA-VTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVIS-SDEDQMAANLVKHGPL--AVGINAVWMQTYIGGVSCPYICGKYLD 770
            F  +  +  K Y++ EE+ +R + F +NLR        + T   G+ +FSD++  E +R++L    +      A K+  L  T   P   DWR  G  VT VK+QG+CGSCW+FS TGALE A  ++TG+L  L+EQQLVDC    +       + GC GGL + AFEYI    G+  E  YPY G D G CK+  SK  A V + + I+ +DE+ M   +  H P+  A  + A +M  Y  G+     C K  D
Sbjct:   35 FQSWMVQHQKKYSS-EEYYHRLQAFASNLREINAHNARNHTFKMGLNQFSDMSFDELKRKYLWSEPQ---NCSATKSNYLRGTGPYPPSMDWRKKGNFVTPVKNQGSCGSCWTFSTTGALESAVAIATGKLPFLAEQQLVDCAQNFN-------NHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRGQD-GDCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMM-YRKGIYSSTSCHKTPD 277          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: ORYC_ORYSJ (Oryzain gamma chain OS=Oryza sativa subsp. japonica GN=Os09g0442300 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.737e-31
Identity = 94/254 (37.01%), Postives = 133/254 (52.36%), Query Frame = 3
Query:   18 FSLFKSKFSKTYATQEEHDYRFRVFKANL---RRAKRRQLLDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAV---SNFSVISSDEDQMAANLVKHGPLAVGINAV-WMQTYIGGVSCPYICG 758
            F+ F  +  K Y    E   RFR+F  +L   R   RR L  P  + G+ +F+D++  EF+   LG  +       A    +     LP   DWR+ G V+ VKDQG CGSCW+FS TG+LE A+  +TG+ VSLSEQQLVDC        +   + GC+GGL + AFEYI   GG++ E+ YPYTG + G C +    +   V    N ++ + DE + A  LV+  P++V    +   + Y  GV     CG
Sbjct:   62 FARFAVRHGKRYGDAAEVQRRFRIFSESLELVRSTNRRGL--PYRL-GINRFADMSWEEFQASRLGAAQNCSATL-AGNHRMRDAAALPETKDWREDGIVSPVKDQGHCGSCWTFSTTGSLEAAYTQATGKPVSLSEQQLVDC-------ATAYNNFGCSGGLPSQAFEYIKYNGGLDTEEAYPYTGVN-GICHYKPENVGVKVLDSVNITLGAEDELKNAVGLVR--PVSVAFQVINGFRMYKSGVYTSDHCG 301          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 2.269e-31
Identity = 94/258 (36.43%), Postives = 131/258 (50.78%), Query Frame = 3
Query:   27 FKSKFSKTYATQEEHDYRFRVFKANLRRAKRRQLLDPTAVHGVTK----FSDLTPSEFRRQFLGLNRRLRL-PADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINA--VWMQTYIGGVSC-PYICGKYLDH 773
            +K+   + Y   EE  +R  V++ N++  +          HG T     F D+T  EFR Q +G  R  +       + P+    DLP   DWR  G VT VK+Q  CGSCW+FSATGALEG  F  TG+LVSLSEQ LVDC            + GCNGG M  AF+Y+ + GG++ E+ YPY   D   CK+      A  + F+V++  +++     V   GP++V ++A     Q Y  G+   P    K LDH
Sbjct:   32 WKATHRRLYGANEE-GWRRAVWEKNMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFR-QMMGCFRNQKFRKGKVFREPLFL--DLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRP-------QGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVD-EICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDH 277          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.870e-31
Identity = 66/172 (38.37%), Postives = 102/172 (59.30%), Query Frame = 3
Query:  264 NDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDH 773
            + LP   DWR+ G + GVKDQG+CGSCW+FSA  A+E  + + TG L+SLSEQ+LVDCD         S + GC+GGLM+ AFE+++K GG++ E+DYPY   +G   ++ K+     + ++  +  + ++     V H P+++ + A     Q Y  G+     CG  +DH
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDR--------SYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPYKERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGK-CGTAVDH 178          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.055e-31
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  273 PTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFDKSKIAAAVSNFSVISSDEDQMAANLVKH-GPLAVGINA 707
            P   DWR+ G VT VKDQG CGSCW+FS TGALEG HF + G+LVSLSEQ LVDC     PE     + GCNGGLM+ AF+Y+   GG++ E+ YPYT  D   C++     AA  + F  I    ++     V   GP++V I+A
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSR---PEG----NQGCNGGLMDQAFQYVQDNGGIDSEESYPYTAKDDEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAIDA 140          
BLAST of CF835837 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.055e-31
Identity = 79/250 (31.60%), Postives = 125/250 (50.00%), Query Frame = 3
Query:   36 KFSKTYATQEEHDYRFRVFKANLRRAKRRQL-LDPTAVHGVTKFSDLTPSEFRRQFLGLNRRLRLPADAQKAPILPTNDLPTDFDWRDHGAVTGVKDQGACGSCWSFSATGALEGAHFLSTGELVSLSEQQLVDCDHECDPEESGSCDSGCNGGLMNSAFEYILKAGGVEREKDYPYTGTDGGSCKFD-KSKIAAAVSNFSVISSDEDQMAANLVKHGPLAVGINAVW--MQTYIGGVSCPYICGKYLDH 773
            K+ K+Y +  E + RF +FK  LR         + +   G+ +F+DLT  EFR  +LG          + +        LP+  DWR  GAV  +K QG CG CW+FSA   +EG + + TG L+SLSEQ+L+DC    +         GCNGG +   F++I+  GG+  E++YPYT  D G C  D +++    +  +  +  + +      V + P++V ++A     + Y  G+     CG  +DH
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD-GECNLDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKHYSSGIFTG-PCGTAIDH 288          
The following BLAST results are available for this feature:
BLAST of CF835837 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
CYSP2_HORVU5.971e-3236.69Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=E... [more]
CATH_RAT5.971e-3234.90Cathepsin H OS=Rattus norvegicus GN=Ctsh PE=1 SV=1[more]
CATH_HUMAN5.971e-3238.16Cathepsin H OS=Homo sapiens GN=CTSH PE=1 SV=4[more]
CYSP_HEMSP7.799e-3237.40Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CATH_BOVIN7.799e-3237.11Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
ORYC_ORYSJ1.737e-3137.01Oryzain gamma chain OS=Oryza sativa subsp. japonic... [more]
CATL2_HUMAN2.269e-3136.43Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]
CYSPL_SOLLC3.870e-3138.37Low-temperature-induced cysteine proteinase (Fragm... [more]
CATL1_CHICK5.055e-3147.95Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
ACTN_ACTDE5.055e-3131.60Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_01P17_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa01P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835837 ID=CF835837; Name=CF835837; organism=Citrus sinensis; type=EST; length=774bp
TGAACGCGGAGCACCTCTTCTCCCTCTTCAAGTCCAAATTCTCCAAGACT
TACGCCACTCAGGAGGAGCACGATTACCGATTCCGCGTGTTCAAGGCTAA
CCTCCGCCGAGCAAAGCGACGCCAGCTCCTGGACCCCACTGCTGTCCACG
GTGTCACCAAGTTCTCCGACTTAACGCCGTCTGAATTCCGCCGTCAGTTC
CTTGGCTTGAATAGGCGGCTTCGGCTACCAGCTGACGCTCAAAAGGCTCC
TATCCTCCCTACCAACGATCTTCCTACTGACTTTGACTGGCGTGATCACG
GCGCCGTTACTGGCGTCAAAGACCAGGGCGCATGTGGATCGTGCTGGTCG
TTTAGTGCAACCGGCGCTTTGGAGGGAGCGCACTTCTTATCGACGGGCGA
GCTTGTCAGCCTCAGTGAGCAACAGCTTGTGGACTGTGATCACGAGTGTG
ATCCAGAGGAATCTGGTTCATGTGACTCTGGGTGCAATGGTGGGCTAATG
AACTCTGCCTTTGAGTACATACTCAAGGCTGGTGGGGTTGAGCGAGAGAA
GGACTACCCTTACACTGGGACCGACGGTGGTTCCTGCAAATTTGACAAAA
GCAAAATTGCTGCAGCTGTATCTAATTTCAGTGTTATTTCCTCTGATGAA
GATCAAATGGCTGCAAATTTGGTGAAACATGGCCCTCTGGCAGTGGGTAT
CAATGCCGTTTGGATGCAAACATATATTGGAGGAGTTTCATGCCCATACA
TTTGCGGGAAGTATTTGGATCATG
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