CF835847

Overview
NameCF835847
Unique NameCF835847
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: FGFR1_XENLA (Fibroblast growth factor receptor 1 OS=Xenopus laevis GN=fgfr1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.287e-14
Identity = 52/172 (30.23%), Postives = 86/172 (50.00%), Query Frame = -1
Query:  363 EFLAQVSMVSRL-KHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVK-------GAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT 854
            + ++++ M+  + KH+N + LLG C       +  E+ S G+L + L  R+             P  +LS++  V  A   A+G++YL  K     IHRD+ + NVL+ +D++ KIADF L+     +     +T       + APE         +SDV+SFGV+L E+ T
Sbjct:  521 DLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYTSKGNLREYLRARRPPAMEYCYNPTCVPDQLLSFKDLVSCAYQVARGMDYLASKK---CIHRDLAARNVLVTEDNIMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 689          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: YTYK2_DICDI (Probable tyrosine-protein kinase DDB_G0283397 OS=Dictyostelium discoideum GN=DDB_G0283397 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 60/180 (33.33%), Postives = 89/180 (49.44%), Query Frame = -1
Query:  333 EEFLAQVSMVSRLKHENFVQLLGYC-VDGTS--RVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEK-ADPHIIHRDIKSSNVLIFDD-DVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLP 857
            E F  +VS++S+L H   V  +G C +DG S  R +  E+   GSL  +L  +           L    ++ IA   A+G+ YLH    +  I+HRD+ SSN+L+     VAKI DF LS +       +  T  +G+  + APE         K DVYSF ++L E++T R P +   P
Sbjct:  218 EIFDKEVSIMSKLCHPTCVMFIGACSLDGPSNDRSIIMEYMEGGSLRRLLDEKSSYH-------LPPSLQLSIARDIAEGMNYLHTNFKEGPIVHRDLTSSNILLNSSYTVAKINDFGLSKEMKPGPTEM--TAAMGSLAWMAPECFKAENYTEKVDVYSFAIILWEIVTCRDPYNGMEP 388          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: YES_XIPHE (Tyrosine-protein kinase Yes OS=Xiphophorus helleri GN=yes PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 67/209 (32.06%), Postives = 104/209 (49.76%), Query Frame = -1
Query:  267 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRV-LAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFG--YHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKP--------VDHTLPRGQQSLVTWATPKLSEDKVRQC 857
            E FL +  ++ +L+H+  V L  Y V     + +  EF   GSL D L  ++G      G  L   Q V +A   A G+ ++      + IHRD++++N+L+ D+ V KIADF L+    D     ++ R    F   + APE A+ G+   KSDV+SFG++L EL+T GR P        V   + RG +       P+   + +RQC
Sbjct:  316 EAFLEEAQIMKKLRHDKLVPL--YAVVSEEPIYIVTEFMGKGSLLDFL--KEG-----DGKHLKLPQLVDMASQIADGMAFIERM---NYIHRDLRAANILVADNLVCKIADFGLARLIEDNE---YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGMVNREVLEQVDRGYRMPCPQGCPESLHEMMRQC 509          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: Y9847_DICDI (Probable serine/threonine-protein kinase DDB_G0267686 OS=Dictyostelium discoideum GN=DDB_G0267686 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 53/162 (32.72%), Postives = 84/162 (51.85%), Query Frame = -1
Query:  369 EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLEL 854
            +FL ++ ++S L+  + V   G  +D     +  E+ SN +L+ ++H +            +W    K A+   +G+  LH    P I+HRD+KS N+L+ D+   K+ADF LS  A   +A   +TR  GTF Y APE    G    K D++S G++L EL
Sbjct: 1989 DFLKELEIMSSLRSPHVVYFYGMVLD-PKICMIMEYCSNQTLYHLMHLQMN---------FTWDWVFKFAIEMVRGVNCLHSWK-PVIVHRDLKSLNLLVSDNWTIKVADFGLSRFATAKSASNRTTR--GTFAYCAPE-VFYGIHTTKGDIFSIGIILWEL 2136          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: TOS3_YEAST (Serine/threonine-protein kinase TOS3 OS=Saccharomyces cerevisiae GN=TOS3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = -1
Query:  351 QVSMVSRLKHENFVQLLGYCVD--GTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHS-------TRVLGTFGYHAPEYAMTGQ---LNAKSDVYSFGVVLLELLTGRKP 842
            ++ ++ R  HEN V+L     D   T   L  E+ S G +      +  +K   P  +L++QQ  K+ +    GLEYLH +    I HRDIK SN+LI  +   KI+DF ++      +  + S       +R LGT  + APE   T +    ++  D++S GV +  LL G+ P
Sbjct:  104 EIEVMKRCHHENVVELYEILNDPESTKVYLVLEYCSRGPVKWCPENKMEIKAVGPS-ILTFQQSRKVVLDVVSGLEYLHSQG---ITHRDIKPSNLLISSNGTVKISDFGVAMSTATGSTNIQSSHEQLLKSRALGTPAFFAPELCSTEKEYSCSSAIDIWSLGVTIYCLLFGKLP 275          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: TOS3_YEAS7 (Serine/threonine-protein kinase TOS3 OS=Saccharomyces cerevisiae (strain YJM789) GN=TOS3 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 55/176 (31.25%), Postives = 86/176 (48.86%), Query Frame = -1
Query:  351 QVSMVSRLKHENFVQLLGYCVD--GTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHS-------TRVLGTFGYHAPEYAMTGQ---LNAKSDVYSFGVVLLELLTGRKP 842
            ++ ++ R  HEN V+L     D   T   L  E+ S G +      +  +K   P  +L++QQ  K+ +    GLEYLH +    I HRDIK SN+LI  +   KI+DF ++      +  + S       +R LGT  + APE   T +    ++  D++S GV +  LL G+ P
Sbjct:  104 EIEVMKRCHHENVVELYEILNDPESTKVYLVLEYCSRGPVKWCPENKMEIKAVGPS-ILTFQQSRKVVLDVVSGLEYLHSQG---ITHRDIKPSNLLISSNGTVKISDFGVAMSTATGSTNIQSSHEQLLKSRALGTPAFFAPELCSTEKEYSCSSAIDIWSLGVTIYCLLFGKLP 275          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: STK4_XENTR (Serine/threonine-protein kinase 4 OS=Xenopus tropicalis GN=stk4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 50/169 (29.59%), Postives = 83/169 (49.11%), Query Frame = -1
Query:  351 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKP 857
            +E + +++++ +    + V+  G     T   +  EF   GS+ DI+  RK          L   +   I     KGLEYLH       IHRDIK+ N+L+  +  AK+ADF ++ Q  D  A+ ++  V+GT  + APE       N  +D++S G+  +E+  G+ P
Sbjct:   68 QEIIKEIAIMQQCDSLHVVKYYGSYFKNTDLWIVMEFCGGGSISDIIRLRK--------QTLKEDETATILQSTLKGLEYLHFMRK---IHRDIKAGNILLNSEGTAKLADFGVAGQLTDTMAKRNT--VIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPP 223          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: RAF1_RAT (RAF proto-oncogene serine/threonine-protein kinase OS=Rattus norvegicus GN=Raf1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 57/196 (29.08%), Postives = 95/196 (48.47%), Query Frame = -1
Query:  288 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNA---KSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVT---WATPKLS 857
            + F  +V+++ + +H N +  +GY       ++  ++    SL+  LH ++              Q + IA   A+G++YLH K   +IIHRD+KS+N+ + +    KI DF L+      +      +  G+  + APE       N    +SDVYS+G+VL EL+TG  P  H   R Q   +    +A+P LS
Sbjct:  388 QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT-QWCEGSSLYKHLHVQE--------TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLS 571          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: NTRK1_HUMAN (High affinity nerve growth factor receptor OS=Homo sapiens GN=NTRK1 PE=1 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = -1
Query:  351 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDIL--HG-----RKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLT-GRKP 857
            ++F  +  +++ L+H++ V+  G C +G   ++ +E+  +G L+  L  HG       G +   PGP L   Q + +A   A G+ YL   A  H +HRD+ + N L+    V KI DF +S             R +    +  PE  +  +   +SDV+SFGVVL E+ T G++P
Sbjct:  555 QDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGP-LGLGQLLAVASQVAAGMVYL---AGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQP 727          
BLAST of CF835847 vs. ExPASy Swiss-Prot
Match: MIL_AVIMH (Serine/threonine-protein kinase-transforming protein mil OS=Avian retrovirus MH2 GN=V-MIL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 57/197 (28.93%), Postives = 95/197 (48.22%), Query Frame = -1
Query:  285 EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNA---KSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVT---WATPKLSE 857
            + F  +V+++ + +H N +  +GY       ++  ++    SL+  LH ++              Q + IA   A+G++YLH K   +IIHRD+KS+N+ +      KI DF L+      +      +  G+  + APE       N    +SDVYS+G+VL EL+TG  P  H   R Q   +    +A+P LS+
Sbjct:  121 QAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVT-QWCEGSSLYKHLHVQE--------TKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHGGLTVKIGDFGLATVKSRWSGSQQVEQPTGSILWMAPEVIRMQDSNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSK 305          
The following BLAST results are available for this feature:
BLAST of CF835847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FGFR1_XENLA2.287e-1430.23Fibroblast growth factor receptor 1 OS=Xenopus lae... [more]
YTYK2_DICDI2.987e-1433.33Probable tyrosine-protein kinase DDB_G0283397 OS=D... [more]
YES_XIPHE2.987e-1432.06Tyrosine-protein kinase Yes OS=Xiphophorus helleri... [more]
Y9847_DICDI2.987e-1432.72Probable serine/threonine-protein kinase DDB_G0267... [more]
TOS3_YEAST2.987e-1431.25Serine/threonine-protein kinase TOS3 OS=Saccharomy... [more]
TOS3_YEAS72.987e-1431.25Serine/threonine-protein kinase TOS3 OS=Saccharomy... [more]
STK4_XENTR2.987e-1429.59Serine/threonine-protein kinase 4 OS=Xenopus tropi... [more]
RAF1_RAT2.987e-1429.08RAF proto-oncogene serine/threonine-protein kinase... [more]
NTRK1_HUMAN2.987e-1429.94High affinity nerve growth factor receptor OS=Homo... [more]
MIL_AVIMH2.987e-1428.93Serine/threonine-protein kinase-transforming prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835847 ID=CF835847; Name=CF835847; organism=Citrus sinensis; type=EST; length=857bp
TTTTTTTTTTTTTTAATAGTTTGCAAGCCTGCATGTGTGCGCATACTTGC
CCACACACAAATGGGGGAGAGAGAGAGTCACTAGCTTGACTAGCTTGCTG
ATTCACCAGCAGGTCCAGGCCGTGCATTTAGCAGGGGCTGGAGGGCTTTG
ACAACAATGCTCATATTTGGACGGAAATCAGCTTCATACTGAACACACAG
AGCAGCAACTGCAGCCATCTTTGCAACTGCCTTGGGAGGATAATCTCCTC
CTAGTCTTGCATCAACGCATTGCCTAACCTTATCTTCACTAAGTTTCGGT
GTGGCCCATGTCACTAGACTCTGCTGTCCACGTGGTAGTGTATGATCGAC
AGGTTTTCGACCTGTCAGAAGCTCAAGCAGAACAACACCAAAGCTGTATA
CATCACTCTTTGCATTCAACTGTCCAGTCATTGCATACTCAGGAGCATGA
TAACCAAAAGTTCCAAGAACACGAGTAGAATGAAGGCGAGCTGCCATATC
AGGAGCTTGATTAGATAAATCAAAGTCGGCAATCTTTGCTACATCATCAT
CAAAAATTAGTACATTGCTGGACTTAATATCGCGATGGATAATATGAGGA
TCTGCCTTCTCATGCAAGTATTCAAGCCCTTTCGCAGCCCCTACAGCAAT
TTTCACTCGCTGTTGCCATGACAAAACAGGACCAGGCTGAGCTCCTTTTA
CACCTTTCCTCCCATGAAGAATATCATGAAGAGATCCATTAGATGCAAAC
TCGTAGGCAAGCACACGGGAAGTCCCATCAACACAATACCCGAGCAGCTG
AACAAAGTTTTCATGCTTCAACCTTGATACCATGGAAACCTGTGCTAAAA
ACTCCTC
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