CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1743_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g74360 OS=Arabidopsis thaliana GN=At1g74360 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 45/148 (30.41%), Postives = 80/148 (54.05%), Query Frame = 3
Query:  300 VKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSR-----LKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +KV  ++    +  ++ + T NF    ++G G YG VY G+L  G   A+KKL     + ++EF A++ ++S        H N V+L G+C+DG+ ++L +E+   GSL +++  +           L W++R+ IA   A+GL +LH
Sbjct:  792 IKVIRLDKSTFTYADILKATSNFSEERVVGRGGYGTVYRGVLPDGREVAVKKLQREGTEAEKEFRAEMEVLSANAFGDWAHPNLVRLYGWCLDGSEKILVHEYMGGGSLEELITDK---------TKLQWKKRIDIATDVARGLVFLH 930          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 57/171 (33.33%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  216 GNAYMVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            G  ++ K    T     ASE     A A  +Q      +    ++  T +F  +  IG G +G VY G   +G   A+K+L   S+Q + EF  +V +V++L+H N V+LLG+ + G  R+L YE+  N SL  +L      K  Q    L W QR  I  G A+G+ YLH
Sbjct:  307 GYCFLAKKKKKTFDTASASEVGDDMATADSLQ------LDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLF--DPTKQIQ----LDWMQRYNIIGGIARGILYLH 465          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK37_ARATH (Cysteine-rich receptor-like protein kinase 37 OS=Arabidopsis thaliana GN=CRK37 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.365e-17
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 3
Query:  357 TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            T NF     +G+G +G VY GIL SG   A+K+L   S Q   EF  +V +++RL+H N V+LLG+C +    +L YEF  N SL   +   +  +      VL+W  R  I  G A+GL YLH
Sbjct:  342 TNNFSLENKLGQGGFGSVYKGILPSGQEIAVKRLRKGSGQGGMEFKNEVLLLTRLQHRNLVKLLGFCNEKDEEILVYEFVPNSSLDHFIFDEEKRR------VLTWDVRYTIIEGVARGLLYLH 459          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: WAKLG_ARATH (Wall-associated receptor kinase-like 8 OS=Arabidopsis thaliana GN=WAKL8 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 47/132 (35.61%), Postives = 78/132 (59.09%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD-EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S ++L+  T+ F  + ++G+G  G VY G+L+ G   A+KK  A K+ + EEF+ ++ ++S++ H N V++LG C++    +L YEF  N +L D LH       ++  P +SW+ R+ IA   A  L YLH
Sbjct:  379 SSNDLENATDRFNASRILGQGGQGTVYKGMLEDGMIVAVKKSKALKEENLEEFINEIILLSQINHRNVVKILGCCLETEVPILVYEFIPNRNLFDHLH-----NPSEDFP-MSWEVRLCIACEVADALSYLH 504          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: WAKLB_ARATH (Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 48/132 (36.36%), Postives = 73/132 (55.30%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD-EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S  EL++ T+NF  N ++G+G  G VY G+L  G   A+K+  A  +   EEF+ +V +++++ H N V+LLG C++    VL YEF  NG L   LH             ++W+ R+ IA+  A  L YLH
Sbjct:  405 SSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEVVVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDE------SDDYTMTWEVRLHIAIEIAGALSYLH 530          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: IRAK4_BOVIN (Interleukin-1 receptor-associated kinase 4 OS=Bos taurus GN=IRAK4 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.086e-16
Identity = 54/144 (37.50%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  327 AISVDELKEITENFGTNAL------IGEGSYGRVYYGILKSGHAAAIKKLDA-----SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            + S  ELK++T NF    +      +GEG +G VY G + +    A+KKL A     +++  ++F  ++ ++++ +HEN V+LLG+  DG    L Y +  NGSL D L    G       P LSW  R KIA GAA GL YLH
Sbjct:  168 SFSFFELKDVTNNFDERPISVGGNKMGEGGFGVVYKGYVNN-RTVAVKKLAAMVDISTEELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGT------PPLSWNMRCKIAQGAANGLSYLH 304          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S  ++  +T NF    ++G+G +G VY+G +      A+K L  +S Q  ++F A+V ++ R+ H+N V L+GYC +G +  L YE+ +NG L      ++ + G +   +L+W  R+KI + +A+GLEYLH
Sbjct:  569 SYSQVVIMTNNF--QRILGKGGFGMVYHGFVNGTEQVAVKILSHSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDEGDNLALIYEYMANGDL------KEHMSGTRNRFILNWGTRLKIVIESAQGLEYLH 692          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: WAKLS_ARATH (Putative wall-associated receptor kinase-like 16 OS=Arabidopsis thaliana GN=WAKL16 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 47/138 (34.06%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  315 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD-EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            I+    + +++KE T  +  + ++G+G    VY GIL      AIKK         E+F+ +V ++S++ H N V+LLG C++    +L YEF + GSL D LHG   V        L+W+ R++IA+  A  + YLH
Sbjct:   91 IDFKIFTEEDMKEATNGYDVSRILGQGGQWTVYKGILPDNSIVAIKKTRLGDNNQVEQFINEVLVLSQINHRNVVKLLGCCLETEVPLLVYEFITGGSLFDHLHGSMFVSS------LTWEHRLEIAIEVAGAIAYLH 222          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  216 GNAYMVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            G  ++ + +  T     ASE     A A  +Q      +    ++  T +F  +  IG G +G VY G   +G   A+K+L   S+Q + EF  +V +V++L+H N V+LLG+ + G  R+L YE+  N SL  +L      K  Q    L W QR  I  G A+G+ YLH
Sbjct:  309 GYCFLAQRTKKTFDTASASEVGDDMATADSLQ------LDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSLDCLLF--DPTKQTQ----LDWMQRYNIIGGIARGILYLH 467          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK23_ARATH (Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.418e-16
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 3
Query:  357 TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            T NF     +G+G +G VY G   SG   A+K+L   S Q + EF  +V +V++L+H N V+LLGYC++G  ++L YEF  N SL   L      +       L W +R KI  G A+G+ YLH
Sbjct:  505 TNNFLPINKLGQGGFGEVYKGTFPSGVQVAVKRLSKTSGQGEREFENEVVVVAKLQHRNLVRLLGYCLEGEEKILVYEFVHNKSLDYFLFDTTMKR------QLDWTRRYKIIGGIARGILYLH 622          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
Y1743_ARATH6.365e-1730.41Probable LRR receptor-like serine/threonine-protei... [more]
CRK6_ARATH6.365e-1733.33Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
CRK37_ARATH6.365e-1739.52Cysteine-rich receptor-like protein kinase 37 OS=A... [more]
WAKLG_ARATH1.086e-1635.61Wall-associated receptor kinase-like 8 OS=Arabidop... [more]
WAKLB_ARATH1.086e-1636.36Wall-associated receptor kinase-like 2 OS=Arabidop... [more]
IRAK4_BOVIN1.086e-1637.50Interleukin-1 receptor-associated kinase 4 OS=Bos ... [more]
Y5182_ARATH1.418e-1634.85Probable LRR receptor-like serine/threonine-protei... [more]
WAKLS_ARATH1.418e-1634.06Putative wall-associated receptor kinase-like 16 O... [more]
CRK8_ARATH1.418e-1632.75Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]
CRK23_ARATH1.418e-1639.52Putative cysteine-rich receptor-like protein kinas... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
back to top