CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            EL+  T       +IGEG YG VY GIL  G   A+K L  ++ Q ++EF  +V ++ R++H+N V+LLGYCV+G  R+L Y+F  NG+L   +HG  G     P   L+W  R+ I +G AKGL YLH
Sbjct:  146 ELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVG--DVSP---LTWDIRMNIILGMAKGLAYLH 269          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.031e-22
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 3
Query:  327 AISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            A + +ELK  T NF  ++L+GEG +G V+ G +           SG   A+KKL     Q  +E+L +V+ + +L H N V+L+GYCV+G +R+L YEF   GSL + L  R    GAQP   L+W  R+K+A+GAAKGL +LH
Sbjct:   70 AFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVEGENRLLVYEFMPKGSLENHLFRR----GAQP---LTWAIRMKVAIGAAKGLTFLH 206          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: ANX2_ARATH (Receptor-like protein kinase ANXUR2 OS=Arabidopsis thaliana GN=ANX2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S+ E+K  T NF  + +IG G +G+VY G++  G   AIKK +  S+Q   EF  ++ ++SRL+H++ V L+GYC +G    L Y++ S G+L + L+  K        P L+W++R++IA+GAA+GL YLH
Sbjct:  510 SLSEIKHGTHNFDESNVIGVGGFGKVYKGVIDGGTKVAIKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLIYDYMSLGTLREHLYNTK-------RPQLTWKRRLEIAIGAARGLHYLH 634          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.582e-22
Identity = 53/132 (40.15%), Postives = 84/132 (63.64%), Query Frame = 3
Query:  339 DELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK--LDASKQPDE-EFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +EL++  + F   +++G+GS+  VY G+L+ G   A+K+  + + KQ +  EF  ++ ++SRL H + + LLGYC +   R+L YEF ++GSLH+ LHG+      Q    L W +RV IAV AA+G+EYLH
Sbjct:  503 EELEKAADGFKEESIVGKGSFSCVYKGVLRDGTTVAVKRAIMSSDKQKNSNEFRTELDLLSRLNHAHLLSLLGYCEECGERLLVYEFMAHGSLHNHLHGKNKALKEQ----LDWVKRVTIAVQAARGIEYLH 630          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: EXS_ARATH (Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.121e-21
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 3
Query:  261 YHASEAAPKGAQAVKVQPIEVPAISV--DELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            Y  S +  +   ++ +   E P + V   ++ E T++F    +IG+G +G VY   L      A+KKL  +K Q + EF+A++  + ++KH N V LLGYC     ++L YE+  NGSL   L  + G+       VL W +R+KIAVGAA+GL +LH
Sbjct:  880 YFLSGSRSREPLSINIAMFEQPLLKVRLGDIVEATDHFSKKNIIGDGGFGTVYKACLPGEKTVAVKKLSEAKTQGNREFMAEMETLGKVKHPNLVSLLGYCSFSEEKLLVYEYMVNGSLDHWLRNQTGML-----EVLDWSKRLKIAVGAARGLAFLH 1032          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.464e-21
Identity = 63/199 (31.66%), Postives = 99/199 (49.75%), Query Frame = 3
Query:  159 IMSCFGCC------EEDDMHKAADNGNAYMVKSSAGTDGAYHASEAAPKGAQAVKVQPIEVP---AISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            I  C  CC      +     +   NG+ ++     G       S A+ K A A  +              E+ + T  F  ++L+G G +GRVY G L+ G   A+K+ +  S+Q   EF  ++ M+S+L+H + V L+GYC + +  +L YE+ +NG L   L+G          P LSW+QR++I +GAA+GL YLH
Sbjct:  432 IAVCCYCCLVASRKQRSTSPQEGGNGHPWLPLPLYGLSQTLTKSTASHKSATASCISLASTHLGRCFMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYG-------ADLPPLSWKQRLEICIGAARGLHYLH 623          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: NORK_MEDTR (Nodulation receptor kinase OS=Medicago truncatula GN=NORK PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.464e-21
Identity = 56/141 (39.72%), Postives = 84/141 (59.57%), Query Frame = 3
Query:  306 VQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIK-KLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++ + V   +++ +++ TE + T  LIGEG +G VY G L  G   A+K +   S Q   EF  +++++S ++HEN V LLGYC +   ++L Y F SNGSL D L+G      A    +L W  R+ IA+GAA+GL YLH
Sbjct:  578 IKSVSVKPFTLEYIEQATEQYKT--LIGEGGFGSVYRGTLDDGQEVAVKVRSSTSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGE-----ASKRKILDWPTRLSIALGAARGLAYLH 711          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1684_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.912e-21
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  321 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            V + +  EL   T+NF ++  IG+G YG+VY G L SG   AIK+  + S Q ++EFL ++ ++SRL H N V LLG+C +   ++L YE+  NG+L D +     VK  +P   L +  R++IA+G+AKG+ YLH
Sbjct:  610 VKSFTYAELALATDNFNSSTQIGQGGYGKVYKGTLGSGTVVAIKRAQEGSLQGEKEFLTEIELLSRLHHRNLVSLLGFCDEEGEQMLVYEYMENGTLRDNI----SVKLKEP---LDFAMRLRIALGSAKGILYLH 738          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK41_ARATH (Cysteine-rich receptor-like protein kinase 41 OS=Arabidopsis thaliana GN=CRK41 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.261e-21
Identity = 54/149 (36.24%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  285 KGAQAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSL-HDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            K  + + ++  ++  +  D ++  T +F  +  +GEG +G VY G+L  G   A+K+L   S Q D EF+ +VS+V++L+H N V+LLG+C+ G  R+L YEF  N SL H I    + +       +L W+ R +I  G A+GL YLH
Sbjct:  317 KDLEELMIKDAQLLQLDFDTIRLATNDFSRDNQLGEGGFGAVYKGVLDYGEEIAVKRLSMKSGQGDNEFINEVSLVAKLQHRNLVRLLGFCLQGEERILIYEFFKNTSLDHYIFDSNRRM-------ILDWETRYRIISGVARGLLYLH 458          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.259e-21
Identity = 53/138 (38.41%), Postives = 79/138 (57.25%), Query Frame = 3
Query:  315 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++  + ++ ++K  T NF     IGEG +G VY G+L  G   A+K+L + SKQ + EF+ ++ M+S L+H N V+L G C++G   +L YE+  N SL   L G +     +    L W  R KI +G AKGL YLH
Sbjct:  652 LQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTE-----KQRLHLDWSTRNKICIGIAKGLAYLH 784          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
Y1154_ARATH5.031e-2243.41Probable serine/threonine-protein kinase At1g01540... [more]
APK2B_ARATH5.031e-2242.36Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
ANX2_ARATH8.582e-2240.15Receptor-like protein kinase ANXUR2 OS=Arabidopsis... [more]
ACR4_ARATH8.582e-2240.15Serine/threonine-protein kinase-like protein ACR4 ... [more]
EXS_ARATH1.121e-2136.08Leucine-rich repeat receptor protein kinase EXS OS... [more]
THE1_ARATH1.464e-2131.66Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
NORK_MEDTR1.464e-2139.72Nodulation receptor kinase OS=Medicago truncatula ... [more]
Y1684_ARATH1.912e-2141.18Probable LRR receptor-like serine/threonine-protei... [more]
CRK41_ARATH3.261e-2136.24Cysteine-rich receptor-like protein kinase 41 OS=A... [more]
Y5343_ARATH4.259e-2138.41Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
back to top