CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1124_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g12460 OS=Arabidopsis thaliana GN=At1g12460 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 43/119 (36.13%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  381 LIGEGSYGRVYYGILKSGHAAAIKKLDASKQ--PDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGR--KGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +IG GS G VY    + G + A+KKL+   +    EEF  ++  +  L+H N     GY    T +++  EF  NGSL+D LH R   G   +     L+W +R +IA+G AK L +LH
Sbjct:  598 IIGMGSIGSVYRASFEGGVSIAVKKLETLGRIRNQEEFEQEIGRLGGLQHPNLSSFQGYYFSSTMQLILSEFVPNGSLYDNLHLRIFPGTSSSYGNTDLNWHRRFQIALGTAKALSFLH 716          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5332_ARATH (Probable inactive receptor kinase At5g53320 OS=Arabidopsis thaliana GN=At5g53320 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 33/115 (28.70%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  381 LIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++G+G +G  Y   L+      +K++     P  EF  Q+  +  +KHEN   L GY      +++ Y++  +GSL  +LHG+KG++  +    L W+ R+ +  G A+G+ ++H
Sbjct:  313 VLGKGPFGTTYKVDLEDSATIVVKRIKEVSVPQREFEQQIENIGSIKHENVATLRGYFYSKDEKLVVYDYYEHGSLSTLLHGQKGLRDRKR---LEWETRLNMVYGTARGVAHIH 424          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: WAKLO_ARATH (Wall-associated receptor kinase-like 14 OS=Arabidopsis thaliana GN=WAKL14 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 46/132 (34.85%), Postives = 69/132 (52.27%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQV----SMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            E+++ T+ F     +G G+YG VY G L++    AIK+L   +  D E L QV     ++S + H N V+LLG C++    VL YE+  NG+L + L   +       G  L W  R+ +A   AK + YLH
Sbjct:  340 EIEKATDGFSEKQKLGIGAYGTVYRGKLQNDEWVAIKRL---RHRDSESLDQVMNEIKLLSSVSHPNLVRLLGCCIEQGDPVLVYEYMPNGTLSEHLQRDR-------GSGLPWTLRLTVATQTAKAIAYLH 461          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5694_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 OS=Arabidopsis thaliana GN=At5g06940 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 43/110 (39.09%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  396 SYGRVYYGILKSGHAAAIKKLDASKQPDEEFL-AQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYL 722
            S   VY   L SG   A+KKL  SK    + L AQV  +++++H+N  ++LG+C       L YEF  NGSLHD+L        ++ G  L W  R+KIA+G A+ L Y+
Sbjct:  599 SGSEVYVLSLSSGELLAVKKLVNSKNISSKSLKAQVRTIAKIRHKNITRILGFCFKDEMIFLIYEFTQNGSLHDML--------SRAGDQLPWSIRLKIALGVAQALAYI 700          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: PUB32_ARATH (U-box domain-containing protein 32 OS=Arabidopsis thaliana GN=PUB32 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 45/128 (35.16%), Postives = 62/128 (48.44%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            E+ E T  F  +  +GEG YG VY G L+    A             EF  +V ++SR++H N V L+G C +  SR L Y++  NGSL D       V      P LSW+ R++IA      L +LH
Sbjct:  452 EINEATNEFDPSWKLGEGKYGSVYKGNLQHLQVAVKMLPSYGSLNHFEFERRVEILSRVRHPNLVTLMGACPE--SRSLIYQYIPNGSLEDCFSSENNV------PALSWESRIRIASEICSALLFLH 571          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y3804_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 3
Query:  384 IGEGSYGRVYYGIL-KSGHAAAIKKLDASK--QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            IGEG +G VY   L + G   A+KKL  S   Q  E+F  +V ++++ KH N V + GY       +L  E+  NG+L   LH R+        P LSW  R KI +G AKGL YLH
Sbjct:  732 IGEGVFGTVYKAPLGEQGRNLAVKKLVPSPILQNLEDFDREVRILAKAKHPNLVSIKGYFWTPDLHLLVSEYIPNGNLQSKLHERE-----PSTPPLSWDVRYKIILGTAKGLAYLH 843          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: RPK1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RPK1 OS=Arabidopsis thaliana GN=RPK1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.051e-12
Identity = 44/151 (29.14%), Postives = 68/151 (45.03%), Query Frame = 3
Query:  330 ISVDELKEI------------------TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            + VDE+KEI                  T  F  +  IG G +G  Y   +   +  A+K+L   + Q D++F A++S +  ++H N V L+GY    T   L Y + S G+L D +  R           + W+   KIA+  A+ L YLH
Sbjct:  231 VQVDEIKEIKVFVDIGIPLTYEIIVRATGYFSNSNCIGHGGFGSTYKAEVSPTNVFAVKRLSVGRFQGDQQFHAEISALEMVRHPNLVMLIGYHASETEMFLIYNYLSGGNLQDFIKERSKA-------AIEWKVLHKIALDVARALSYLH 374          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5815_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g58150 OS=Arabidopsis thaliana GN=At5g58150 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 48/157 (30.57%), Postives = 70/157 (44.59%), Query Frame = 3
Query:  264 HASEAAPKGAQAVKVQPIEVPAISVD--ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQ-PDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            H S    K A  + V  I+ P + +   +LK  T NF    ++ EG  G  Y  +L  G  AA+K + +     D E       ++R+ H N   L GYC+    R+  YE     +L  +LH      G    P   W+ R KIA+G A+ L +LH
Sbjct:  485 HDSTTDIKQATQIPVVMIDKPLMKMTLADLKAATFNFDRGTMLWEGKSGPTYGAVLPGGFRAALKVIPSGTTLTDTEVSIAFERLARINHPNLFPLCGYCIATEQRIAIYEDLDMVNLQSLLHN----NGDDSAP---WRLRHKIALGTARALAFLH 634          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5720_ARATH (Probable inactive receptor kinase At5g67200 OS=Arabidopsis thaliana GN=At5g67200 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 3
Query:  381 LIGEGSYGRVYYGILKSGHAAAIKKLDASKQP---DEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            L+G GS G  Y  +L +     +K+LDA+K     +E F   + +V  L+H N V +  Y      R++ Y++  NGSL +++HG +  + A+P   L W   +KIA   A+GL Y+H
Sbjct:  398 LLGRGSVGITYKAVLDNQLIVTVKRLDAAKTAVTSEEAFENHMEIVGGLRHTNLVPIRSYFQSNGERLIIYDYHPNGSLFNLIHGSRSSR-AKP---LHWTSCLKIAEDVAQGLYYIH 511          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: IMK2_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase IMK2 OS=Arabidopsis thaliana GN=IMK2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 47/167 (28.14%), Postives = 87/167 (52.10%), Query Frame = 3
Query:  234 KSSAGTDGAYHASEAAPKGAQAVKVQPIEVPAI-SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTS-RVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            K+S  T  A  A  A+  G    K+   + P + + D+L        T  ++G+ +YG  Y   L+ G+  A+K+L + + +  +EF  +V+ + +++H+N + L  Y +     ++L +++ S GSL   LH R       P  ++ W+ R+KIA G ++GL +LH
Sbjct:  497 KTSEKTVSAGVAGTASAGGEMGGKLVHFDGPFVFTADDLL-----CATAEIMGKSTYGTAYKATLEDGNEVAVKRLREKTTKGVKEFEGEVTALGKIRHQNLLALRAYYLGPKGEKLLVFDYMSKGSLSAFLHARG------PETLIPWETRMKIAKGISRGLAHLH 652          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
Y1124_ARATH4.269e-1336.13Probable LRR receptor-like serine/threonine-protei... [more]
Y5332_ARATH5.576e-1328.70Probable inactive receptor kinase At5g53320 OS=Ara... [more]
WAKLO_ARATH5.576e-1334.85Wall-associated receptor kinase-like 14 OS=Arabido... [more]
Y5694_ARATH7.282e-1339.09Probably inactive leucine-rich repeat receptor-lik... [more]
PUB32_ARATH9.511e-1335.16U-box domain-containing protein 32 OS=Arabidopsis ... [more]
Y3804_ARATH6.165e-1240.17Probably inactive leucine-rich repeat receptor-lik... [more]
RPK1_ARATH8.051e-1229.14Probable LRR receptor-like serine/threonine-protei... [more]
Y5815_ARATH1.373e-1130.57Probably inactive leucine-rich repeat receptor-lik... [more]
Y5720_ARATH1.373e-1133.90Probable inactive receptor kinase At5g67200 OS=Ara... [more]
IMK2_ARATH1.373e-1128.14Probably inactive leucine-rich repeat receptor-lik... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
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