CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y3475_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 44/139 (31.65%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGH-AAAIKKLDASKQPD-EEFLAQVSMVSRLKHENFVQLLGYCVD-----GTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            IS  +L+  T  F ++ ++G GS+G VY  +L +     A+K L+  ++   + F+A+   +  ++H N V+LL  C          R L YEF  NGSL   LH  +  +  +P   L+  +R+ IA+  A  L+YLH
Sbjct:  690 ISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVLNMQRRGAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYEFMPNGSLDMWLHPEEVEEIHRPSRTLTLLERLNIAIDVASVLDYLH 828          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: RPK2_ARATH (LRR receptor-like serine/threonine-protein kinase RPK2 OS=Arabidopsis thaliana GN=RPK2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 44/138 (31.88%), Postives = 64/138 (46.38%), Query Frame = 3
Query:  315 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            I VP I+ D +   T NF  + LIG G +G  Y   +      AIK+L   + Q  ++F A++  + RL+H N V L+GY    T   L Y +   G+L   +  R             W+   KIA+  A+ L YLH
Sbjct:  858 IGVP-ITFDNVVRATGNFNASNLIGNGGFGATYKAEISQDVVVAIKRLSIGRFQGVQQFHAEIKTLGRLRHPNLVTLIGYHASETEMFLVYNYLPGGNLEKFIQERS---------TRDWRVLHKIALDIARALAYLH 985          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y4885_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 40/139 (28.78%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-------ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +   E+ + T  F    LIG G +G+VY   L +    A+KKL+       ++    +EFL ++  ++ ++H N V+L G+C    +  L YE+   GSL  +L      K       L W +R+ +  G A  L Y+H
Sbjct:  763 VRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLPNA-IMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEYMERGSLRKVLENDDEAK------KLDWGKRINVVKGVAHALSYMH 894          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: DRKB_DICDI (Probable serine/threonine-protein kinase drkB OS=Dictyostelium discoideum GN=drkB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  357 TENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPD---EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            T+       IG+G++G VY G  + G   A+KKL A    +   +EF  +++++  L+H N +Q LG C+      +  E+   GSL+ ILH  K +K       +SW    ++ + AAKG+ YLH
Sbjct:  388 TQQIKIGVRIGKGNFGEVYLGTWR-GSQVAVKKLPAHNINENILKEFHREINLMKNLRHPNVIQFLGSCLISPDICICTEYMPRGSLYSILHNEK-IK-------ISWSLVKRMMIDAAKGIIYLH 504          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y9955_DICDI (Probable serine/threonine-protein kinase DDB_G0267514 OS=Dictyostelium discoideum GN=DDB_G0267514 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 46/136 (33.82%), Postives = 75/136 (55.15%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKL----DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            IS  ELK        ++ +GEG++G VY G+ + G + AIK++    D + Q  EEF  +++++SRL+H N V L+  C    +     E+   GSL+D LH +K +K       ++ Q   K+A+  A+G+ YLH
Sbjct:  657 ISFSELK-------ISSKLGEGTFGVVYKGLWR-GSSVAIKQIKINEDVNNQVLEEFRKELTILSRLRHPNIVLLMAACTAPPNLCFITEYLPGGSLYDALHSKK-IK-------MNMQLYKKLAIQIAQGMNYLH 776          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5830_ARATH (Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 36/116 (31.03%), Postives = 60/116 (51.72%), Query Frame = 3
Query:  381 LIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRL-KHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++G+GSYG  Y  +L+      +K+L        EF  Q+ ++SR+  H + V L  Y      +++  ++   G+L  +LHG +G +       L W  RVKI + AAKG+ +LH
Sbjct:  363 VLGKGSYGTAYKAVLEESTTVVVKRLKEVAAGKREFEQQMEIISRVGNHPSVVPLRAYYYSKDEKLMVCDYYPAGNLSSLLHGNRGSEKTP----LDWDSRVKITLSAAKGIAHLH 474          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y4294_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g20940 OS=Arabidopsis thaliana GN=At4g20940 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 43/118 (36.44%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  381 LIGEGSYGRVYYGILKSGHAAAIKKL-DASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTS--RVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++G  S+G  Y   L +G    +K L +   +  +EF  +V   S ++H N V L GY    T   +++  ++ S GSL   L+ R G KG    P L+W QR+KIAV  A+GL YLH
Sbjct:  759 VLGRSSHGTSYRATLDNGVFLTVKWLREGVAKQRKEFAKEVKKFSNIRHPNVVTLRGYYWGPTQHEKLILSDYISPGSLASFLYDRPGRKG----PPLAWTQRLKIAVDVARGLNYLH 872          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: DRKA_DICDI (Probable serine/threonine-protein kinase drkA OS=Dictyostelium discoideum GN=drkA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.996e-11
Identity = 40/117 (34.19%), Postives = 62/117 (52.99%), Query Frame = 3
Query:  384 IGEGSYGRVYYGILKSGHAAAIKKLDASKQPD---EEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            IG+G+YG VY G  + G   A+KKL A    +   +EF  +++++  L+H N +Q LG C+      +  E+   GSL+ ILH +           L W   +K+ + AAKG+ YLH
Sbjct:  380 IGKGNYGEVYLGTWR-GSQVAVKKLPAHNINENILKEFHREINLMKNLRHPNVIQFLGSCLIPPDICICTEYMPRGSLYSILHDQ--------ALQLQWSLLIKMMIDAAKGVIYLH 487          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: TNI3K_RAT (Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 58/176 (32.95%), Postives = 88/176 (50.00%), Query Frame = 3
Query:  237 SSAGTDGAYHASEAAPKGA--------QAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA----SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSR-VLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S  G DG+Y  S  +P G           V +   E+P+    +L EI      + +IG GS+G+VY G  ++    AIK+  A    SK   + F  +VS++ +L H   VQ +G C+D  S+  +  ++ S GSL  +LH +K +        L  Q ++ IAV  AKG+EYLH
Sbjct:  417 SQPGGDGSY-VSVPSPLGKIKSMTKEKADVLLLRAELPSRFHLQLSEIE----FHEIIGSGSFGKVYKGRCRN-KIVAIKRYRANTYCSKSDVDMFCREVSILCQLNHPCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHEQKRI--------LDLQSKLIIAVDVAKGMEYLH 578          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: TNI3K_MOUSE (Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 5.219e-11
Identity = 58/176 (32.95%), Postives = 88/176 (50.00%), Query Frame = 3
Query:  237 SSAGTDGAYHASEAAPKGA--------QAVKVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA----SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSR-VLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S  G DG+Y  S  +P G           V +   E+P+    +L EI      + +IG GS+G+VY G  ++    AIK+  A    SK   + F  +VS++ +L H   VQ +G C+D  S+  +  ++ S GSL  +LH +K +        L  Q ++ IAV  AKG+EYLH
Sbjct:  416 SQPGGDGSY-VSVPSPLGKIKSMTKEKADVLLLRAELPSRFHLQLSEIE----FHEIIGSGSFGKVYKGRCRN-KIVAIKRYRANTYCSKSDVDMFCREVSILCQLNHPCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHEQKRI--------LDLQSKLIIAVDVAKGMEYLH 577          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
Y3475_ARATH1.794e-1131.65Probable LRR receptor-like serine/threonine-protei... [more]
RPK2_ARATH1.794e-1131.88LRR receptor-like serine/threonine-protein kinase ... [more]
Y4885_ARATH3.059e-1128.78Probable LRR receptor-like serine/threonine-protei... [more]
DRKB_DICDI3.059e-1132.54Probable serine/threonine-protein kinase drkB OS=D... [more]
Y9955_DICDI3.996e-1133.82Probable serine/threonine-protein kinase DDB_G0267... [more]
Y5830_ARATH3.996e-1131.03Probable inactive receptor kinase At5g58300 OS=Ara... [more]
Y4294_ARATH3.996e-1136.44Probable LRR receptor-like serine/threonine-protei... [more]
DRKA_DICDI3.996e-1134.19Probable serine/threonine-protein kinase drkA OS=D... [more]
TNI3K_RAT5.219e-1132.95Serine/threonine-protein kinase TNNI3K OS=Rattus n... [more]
TNI3K_MOUSE5.219e-1132.95Serine/threonine-protein kinase TNNI3K OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
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