CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 53/142 (37.32%), Postives = 84/142 (59.15%), Query Frame = 3
Query:  303 KVQPIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            K + +E+P I ++ + + TENF +   +G+G +G VY G L  G   A+K+L   S Q  +EF+ +V++++RL+H N VQ+LG C++G  ++L YE+  N SL   L G+           L+W +R  I  G A+GL YLH
Sbjct:  507 KFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSYLFGK------TRRSKLNWNERFDITNGVARGLLYLH 642          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: SRF1_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsis thaliana GN=SRF1 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 68/195 (34.87%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  174 GCCEEDDMHKAADNGNAYMVKSSAGTDG-------AYHASEAAPKGAQAVKVQPIE-VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEE---FLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            G   + + H+   NGNA  +   +           A   +EA+ K   +    P+  V   +V  L++ T +F    LIG G  G VY   L  G   A++KLD      EE   FL  V+ + R++H N VQL+G+C + + R+L +E+  NG+LHD+LH    +K       LSW  RV+IA+ AAK LEYLH
Sbjct:  406 GSESKQESHEIDMNGNAMDLMHPSSIPPIKRVIAKATEPAEASLKRTTSKSHGPLTAVKHFTVASLQQHTNSFSHENLIGTGMLGSVYRAELPGGKLFAVRKLDKKSPNHEEEGKFLELVNNIDRIRHANIVQLVGFCSEHSQRLLIHEYCRNGTLHDLLHIDDRLK-----IELSWNVRVRIALEAAKALEYLH 595          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20
Identity = 50/133 (37.59%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            IS  EL+  T NF  + +IG G +G V+ G LK     A+K+    S+Q   EFL++++++S+++H + V L+GYC + +  +L YE+   G L   L+G          P LSW+QR+++ +GAA+GL YLH
Sbjct:  477 ISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSHLYG-------STNPPLSWKQRLEVCIGAARGLHYLH 602          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.114e-20
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  327 AISVDELKEITENFGTNALIGEGSYGRVYYGILK----------SGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            A + +ELK  T+NF  + L+GEG +G V+ G +           SG   A+K+L     Q  +E+L +V+ + +L H N V L+GYC +G +R+L YEF   GSL + L  R    GAQP   L+W  R+K+AVGAAKGL +LH
Sbjct:   73 AFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAEGENRLLVYEFMPKGSLENHLFRR----GAQP---LTWAIRMKVAVGAAKGLTFLH 209          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.761e-20
Identity = 57/156 (36.54%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  282 PKGAQAVKVQPIE-VPA-----ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHA-AAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            P G  +   +P + +PA      S+ E+K  T +F    +IG G +G VY G +  G    A+K+L+  S Q  +EF  ++ M+S+L+H + V L+GYC +    VL YE+  +G+L D L  R         P LSW++R++I +GAA+GL+YLH
Sbjct:  484 PHGTDSTNTKPAKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDHLFRRDKTS----DPPLSWKRRLEICIGAARGLQYLH 635          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 3
Query:  315 IEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++    ++ ++K  T+NF     IGEG +G VY G L  G   A+K+L A S+Q + EF+ ++ M+S L+H N V+L G CV+G   +L YE+  N  L   L G    K       L W  R KI +G AKGL +LH
Sbjct:  661 LQTGTFTLRQIKAATDNFDVTRKIGEGGFGSVYKGELSEGKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFG----KDESSRLKLDWSTRKKIFLGIAKGLTFLH 794          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 52/132 (39.39%), Postives = 81/132 (61.36%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            I+  E+ ++T NF    ++G+G +G VY+G L     A      +S Q  +EF A+V ++ R+ H + V L+GYC DG +  L YE+ +NG L + + G++G      G VL+W+ R++IAV AA+GLEYLH
Sbjct:  574 ITYPEVLKMTNNF--ERVLGKGGFGTVYHGNLDGAEVAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMANGDLRENMSGKRG------GNVLTWENRMQIAVEAAQGLEYLH 697          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: RLK6_ARATH (Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.606e-20
Identity = 50/129 (38.76%), Postives = 82/129 (63.57%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            E+  +T NF    ++G+G +G VY+G + +    A+K L  +S Q  +EF A+V ++ R+ H+N V L+GYC +G +  L YE+ +NG L + + G++G      G +L+W+ R+KI V +A+GLEYLH
Sbjct:  586 EVVTMTNNF--ERVLGKGGFGMVYHGTVNNTEQVAVKMLSHSSSQGYKEFKAEVELLLRVHHKNLVGLVGYCDEGENLALIYEYMANGDLREHMSGKRG------GSILNWETRLKIVVESAQGLEYLH 706          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5389_ARATH (Probable receptor-like protein kinase At5g38990 OS=Arabidopsis thaliana GN=At5g38990 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 53/133 (39.85%), Postives = 80/133 (60.15%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHA-AAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            S+ E+K  T +F    +IG G +G VY G +  G    A+K+L+  S Q  +EF  ++ M+S+L+H + V L+GYC D    VL YE+  +G+L D L  R         P LSW++R++I +GAA+GL+YLH
Sbjct:  514 SIYEIKSATNDFEEKLIIGVGGFGSVYKGRIDGGATLVAVKRLEITSNQGAKEFDTELEMLSKLRHVHLVSLIGYCDDDNEMVLVYEYMPHGTLKDHLFRRDKAS----DPPLSWKRRLEICIGAARGLQYLH 642          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 52/133 (39.10%), Postives = 77/133 (57.89%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            I   ++   T NF    LIG+G +G VY  IL  G  AAIK+    S Q   EF  ++ ++SR++H + V L GYC + +  +L YEF   G+L + L+G          P L+W+QR++I +GAA+GL+YLH
Sbjct:  476 IPFTDILSATNNFDEQLLIGKGGFGYVYKAILPDGTKAAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEHLYGSN-------LPSLTWKQRLEICIGAARGLDYLH 601          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
SRK6_BRAOE1.619e-2037.32Putative serine/threonine-protein kinase receptor ... [more]
SRF1_ARATH1.619e-2034.87Protein STRUBBELIG-RECEPTOR FAMILY 1 OS=Arabidopsi... [more]
Y5241_ARATH2.114e-2037.59Probable receptor-like protein kinase At5g24010 OS... [more]
APK2A_ARATH2.114e-2041.67Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
Y5900_ARATH2.761e-2036.54Putative receptor-like protein kinase At5g39000 OS... [more]
Y1765_ARATH3.606e-2038.41Probable LRR receptor-like serine/threonine-protei... [more]
Y1518_ARATH3.606e-2039.39Probable LRR receptor-like serine/threonine-protei... [more]
RLK6_ARATH3.606e-2038.76Receptor-like protein kinase At3g21340 OS=Arabidop... [more]
Y5389_ARATH4.709e-2039.85Probable receptor-like protein kinase At5g38990 OS... [more]
Y2232_ARATH4.709e-2039.10Probable receptor-like protein kinase At2g23200 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
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