CF835848

Overview
NameCF835848
Unique NameCF835848
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5838_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 OS=Arabidopsis thaliana GN=At5g48380 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 56/149 (37.58%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  285 KGAQAVKVQPIE--VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            KG + VKV   +  V  + + +L + TE F  + +I  G  G +Y G L+ G    IK+L  S++ ++EF A++  +  +K+ N V LLGYCV    R+L YE+ +NG L+D LH        +    L W  R+KIA+G AKGL +LH
Sbjct:  274 KGQKGVKVFMFKKSVSKMKLSDLMKATEEFKKDNIIATGRTGTMYKGRLEDGSLLMIKRLQDSQRSEKEFDAEMKTLGSVKNRNLVPLLGYCVANKERLLMYEYMANGYLYDQLH----PADEESFKPLDWPSRLKIAIGTAKGLAWLH 418          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 3
Query:  321 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            + + S+ ++K  T NF +   IGEG +G VY G L  G   A+K+L   SKQ + EFL ++ M+S L H N V+L G CV+G   +L YEF  N SL   L G +  +       L W  R KI +G A+GL YLH
Sbjct:  609 IASFSLRQIKIATNNFDSANRIGEGGFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLR-----LDWPTRRKICIGVARGLAYLH 739          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: SRF4_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsis thaliana GN=SRF4 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 54/138 (39.13%), Postives = 81/138 (58.70%), Query Frame = 3
Query:  321 VPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS---KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            V A S+ +L+     F  N L+GEG+ GRVY    + G   A+K++D+S   K   EEF   VS +S + H+N  +L+GYC +    +L YE+ ++GSLH  LH       ++P   L+W  R++IA+G AK +EYLH
Sbjct:  400 VKAFSLADLQNTASCFSPNRLLGEGTIGRVYKAKFQDGRKFAVKEIDSSLLGKGNPEEFSHIVSSISSIHHKNMAELVGYCSEQGRNMLVYEYFTSGSLHRFLHLSDDF--SKP---LTWNTRIRIALGTAKAIEYLH 532          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: PSYR1_ARATH (Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 57/138 (41.30%), Postives = 78/138 (56.52%), Query Frame = 3
Query:  318 EVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPV-LSWQQRVKIAVGAAKGLEYLH 725
            EV  +++ EL + T+NF    +IG G +G VY   L +G   A+KKL       ++EF A+V ++SR KHEN V L GYCV  ++R+L Y F  NGSL   LH          GP  L W +R+ I  GA+ GL Y+H
Sbjct:  787 EVKDLTIFELLKATDNFSQANIIGCGGFGLVYKATLDNGTKLAVKKLTGDYGMMEKEFKAEVEVLSRAKHENLVALQGYCVHDSARILIYSFMENGSLDYWLHEN------PEGPAQLDWPKRLNIMRGASSGLAYMH 918          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: ACCR4_ARATH (Serine/threonine-protein kinase-like protein CCR4 OS=Arabidopsis thaliana GN=CCR4 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.150e-20
Identity = 57/151 (37.75%), Postives = 81/151 (53.64%), Query Frame = 3
Query:  312 PIEVPAISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-------------QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            P ++   S+DEL   T+ F     +G GS+G VY G+L  G   AIK+ + +                D  F+ ++  +SRL H+N V+LLG+  D   R+L YE+  NGSL D LH        Q  P LSWQ R+ IA+ AA+G++YLH
Sbjct:  425 PGQLMEFSIDELALATDGFSVRFHLGIGSFGSVYQGVLSDGRHVAIKRAELTNPTLSGTTMRHRRADKDSAFVNELESMSRLNHKNLVRLLGFYEDTEERILVYEYMKNGSLADHLH------NPQFDP-LSWQTRLMIALDAARGIQYLH 568          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 51/129 (39.53%), Postives = 80/129 (62.02%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLD-ASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            E+  +T NF    ++G+G +G VYYG +      A+K L  +S Q  ++F A+V ++ R+ H+N V L+GYC +G    L YE+ +NG L + + G++G      G +L+W  R+KIA+ AA+GLEYLH
Sbjct:  571 EVLTMTNNF--QKILGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEHMSGKRG------GSILNWGTRLKIALEAAQGLEYLH 691          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y2393_ARATH (Probable receptor-like protein kinase At2g39360 OS=Arabidopsis thaliana GN=At2g39360 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 48/128 (37.50%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  345 LKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKK-LDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +KE T++F  + +IG G +G+VY G+L+     A+K+    S+Q   EF  +V M+++ +H + V L+GYC + +  ++ YE+   G+L D L+           P LSW+QR++I VGAA+GL YLH
Sbjct:  480 IKEATDDFDESLVIGVGGFGKVYKGVLRDKTEVAVKRGAPQSRQGLAEFKTEVEMLTQFRHRHLVSLIGYCDENSEMIIVYEYMEKGTLKDHLY------DLDDKPRLSWRQRLEICVGAARGLHYLH 601          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: SUB_ARATH (Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 58/135 (42.96%), Postives = 79/135 (58.52%), Query Frame = 3
Query:  333 SVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDAS---KQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILH-GRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            ++  L++ T NF    +IGEGS G VY   L+ G   A+KKL  +    Q D EFL  VS V +LK  + ++LLGYC +   R+L YE+  NGSL D LH  RK  K       L+W  R+ IA+GA+K L++LH
Sbjct:  486 TIASLQQYTNNFSEENIIGEGSIGNVYRAELRHGKFLAVKKLSNTINRTQSDGEFLNLVSNVLKLKRGHILELLGYCNEFGQRLLVYEYCPNGSLQDALHLDRKLHK------KLTWNVRINIALGASKALQFLH 614          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.033e-20
Identity = 49/133 (36.84%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  330 ISVDELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDA-SKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            +  + LK  T+NF     +G G +G VY G+   G   A+K+L   S Q D EF  ++ ++++L+H N V+LLG+C++G  R+L YEF  N SL + +   K         +L W  R K+  G A+GL YLH
Sbjct:  349 VDFETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASLDNFIFDLK------KRQLLDWGVRYKMIGGVARGLLYLH 475          
BLAST of CF835848 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.049e-19
Identity = 54/129 (41.86%), Postives = 76/129 (58.91%), Query Frame = 3
Query:  342 ELKEITENFGTNALIGEGSYGRVYYGILKSGHAAAIKKLDASK-QPDEEFLAQVSMVSRLKHENFVQLLGYCVDGTSRVLAYEFASNGSLHDILHGRKGVKGAQPGPVLSWQQRVKIAVGAAKGLEYLH 725
            E++ +T+NF    ++GEG +G VY+GIL      A+K L  S  Q  +EF A+V ++ R+ H N V L+GYC + ++  L YE+A NG L   L G +G      G  L W  R+KI V  A+GLEYLH
Sbjct:  567 EVEALTDNF--ERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQHLSGERG------GSPLKWSSRLKIVVETAQGLEYLH 687          
The following BLAST results are available for this feature:
BLAST of CF835848 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 242
Match NameE-valueIdentityDescription
Y5838_ARATH6.150e-2037.58Probably inactive leucine-rich repeat receptor-lik... [more]
Y1534_ARATH6.150e-2041.18Probable LRR receptor-like serine/threonine-protei... [more]
SRF4_ARATH6.150e-2039.13Protein STRUBBELIG-RECEPTOR FAMILY 4 OS=Arabidopsi... [more]
PSYR1_ARATH6.150e-2041.30Tyrosine-sulfated glycopeptide receptor 1 OS=Arabi... [more]
ACCR4_ARATH6.150e-2037.75Serine/threonine-protein kinase-like protein CCR4 ... [more]
Y5181_ARATH8.033e-2039.53Probable LRR receptor-like serine/threonine-protei... [more]
Y2393_ARATH8.033e-2037.50Probable receptor-like protein kinase At2g39360 OS... [more]
SUB_ARATH8.033e-2042.96Protein STRUBBELIG OS=Arabidopsis thaliana GN=SUB ... [more]
CRK28_ARATH8.033e-2036.84Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
Y2289_ARATH1.049e-1941.86Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A01_r Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835848 ID=CF835848; Name=CF835848; organism=Citrus sinensis; type=EST; length=725bp
AAGCGCTTTACTACTTTTTTCTTCATCCTGCGCACCTATCGTCGTCTTAT
CCTGCGCACCTCACGCCGGCTCCAGAGTGATTCATTCAAAATATCCAGCT
CGTTGCTTTTCTCTATATCTCAGCTAGCTTTCATAGAGGGGCATTATTGT
GGCAGTGAATCATGAGCTGCTTCGGCTGTTGTGAAGAAGATGATATGCAT
AAAGCTGCTGACAATGGCAATGCATACATGGTTAAAAGTTCAGCAGGAAC
TGATGGAGCCTATCATGCATCTGAAGCAGCACCTAAGGGTGCTCAAGCTG
TGAAAGTCCAGCCCATTGAAGTCCCAGCAATTTCAGTGGATGAATTGAAG
GAAATTACTGAGAACTTTGGGACTAATGCTTTGATTGGAGAAGGTTCATA
TGGAAGAGTATATTATGGGATTCTTAAAAGTGGACATGCTGCAGCAATAA
AAAAGTTGGATGCCAGCAAGCAACCTGATGAGGAGTTTTTAGCACAGGTT
TCCATGGTATCAAGGTTGAAGCATGAAAACTTTGTTCAGCTGCTCGGGTA
TTGTGTTGATGGGACTTCCCGTGTGCTTGCCTACGAGTTTGCATCTAATG
GATCTCTTCATGATATTCTTCATGGGAGGAAAGGTGTAAAAGGAGCTCAG
CCTGGTCCTGTTTTGTCATGGCAACAGCGAGTGAAAATTGCTGTAGGGGC
TGCGAAAGGGCTTGAATACTTGCAT
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