CF835849

Overview
NameCF835849
Unique NameCF835849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Shoot Meristem cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: PR1C_HORVU (Pathogenesis-related protein 1C OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 61/181 (33.70%), Postives = 79/181 (43.65%), Query Frame = -3
Query:  200 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSFVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 742
            GG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   42 GGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGRPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: PR1A_HORVU (Pathogenesis-related protein 1A/1B OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.298e-20
Identity = 61/181 (33.70%), Postives = 79/181 (43.65%), Query Frame = -3
Query:  200 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSFVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 742
            GG +L  GQT +I    GT+A RIWART C F+  G G C+TGDC G L C   G  P TLAE+ +   +  DF D+S IDGFN+ M+FS           C+                          D   C   +C P           P  Y +P D   +T  C    +Y++ FCP
Sbjct:   42 GGFELGSGQTSSINVPAGTQAGRIWARTGCSFNG-GSGSCQTGDCGGQLSCSLSGQPPATLAEFTIGGGSTQDFYDISVIDGFNLAMDFS-----------CSTG------------------------DALQCRDPSCPP-----------PQAYQHPND--VATHACSGNNNYQITFCP 173          
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: RST4_AVESA (Thaumatin-like pathogenesis-related protein 4 OS=Avena sativa GN=RASTL-4 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.121e-19
Identity = 58/181 (32.04%), Postives = 82/181 (45.30%), Query Frame = -3
Query:  200 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSFVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 742
            GG+QLD+GQTWT+    GT + RIW RT C F+  G G C+TGDC G L C   G  P TLAE+++    + D+ D+S ID +N+ M+FS           C+     +C +                                       CPD Y  P D    T +C + ++Y++ FCP
Sbjct:   43 GGQQLDQGQTWTLNVPAGTNSGRIWGRTGCSFN-GGSGSCQTGDCAGALSCTLSG-QPATLAEFSIG--GEHDYYDISVIDVYNLAMDFS-----------CSTGDALQCRD-------------------------------------SSCPDAYHQPDD--PKTHSCNTNSNYQITFCP 169          
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: PRR3_JUNVI (Pathogenesis-related protein (Fragment) OS=Juniperus virginiana PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.534e-18
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = -3
Query:  551 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEY 742
            GG++LD+GQTWT+  A GT +AR W RT C FDASGKG C+TGDC   L C   GA P TLAEY
Sbjct:   40 GGKRLDQGQTWTVNLAAGTASARFWGRTGCTFDASGKGSCQTGDCGRQLSCTVSGAVPATLAEY 103          
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: RST1_AVESA (Thaumatin-like pathogenesis-related protein 1 OS=Avena sativa GN=RASTL-1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.873e-18
Identity = 59/181 (32.60%), Postives = 78/181 (43.09%), Query Frame = -3
Query:  200 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSFVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 742
            GG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDGFN+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   43 GGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGFNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: RST3_AVESA (Thaumatin-like pathogenesis-related protein 3 OS=Avena sativa GN=RASTL-3 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 62/181 (34.25%), Postives = 81/181 (44.75%), Query Frame = -3
Query:  200 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSFVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 742
            GG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +       LK                 C +SG              CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   43 GGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGV------ALK-----------------CRDSG--------------CPDAYHHPND--VATHACNGNSNYQITFCP 169          
BLAST of CF835849 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.754e-17
Identity = 58/181 (32.04%), Postives = 78/181 (43.09%), Query Frame = -3
Query:  200 GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSFVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 742
            GG QL+  Q+  I    GT A RIW RT C F+ +G+G C TGDC G L C   G  P TLAEY +      DF D+S IDG+N+ M+FS           C+  +  +C +                                       CPD Y +P D   +T  C   ++Y++ FCP
Sbjct:   43 GGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFN-NGRGSCATGDCAGALSCTLSG-QPATLAEYTIG--GSQDFYDISVIDGYNLAMDFS-----------CSTGVALKCRDA-------------------------------------NCPDAYHHPND--VATHACNGNSNYQITFCP 169          
The following BLAST results are available for this feature:
BLAST of CF835849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PR1C_HORVU1.298e-2033.70Pathogenesis-related protein 1C OS=Hordeum vulgare... [more]
PR1A_HORVU1.298e-2033.70Pathogenesis-related protein 1A/1B OS=Hordeum vulg... [more]
RST4_AVESA7.121e-1932.04Thaumatin-like pathogenesis-related protein 4 OS=A... [more]
PRR3_JUNVI3.534e-1862.50Pathogenesis-related protein (Fragment) OS=Juniper... [more]
RST1_AVESA7.873e-1832.60Thaumatin-like pathogenesis-related protein 1 OS=A... [more]
RST3_AVESA1.754e-1734.25Thaumatin-like pathogenesis-related protein 3 OS=A... [more]
RST2_AVESA1.754e-1732.04Thaumatin-like pathogenesis-related protein 2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS03_02A03_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835849 ID=CF835849; Name=CF835849; organism=Citrus sinensis; type=EST; length=744bp
TTTTTTTTTTTTTTTTTAAAAGAAGCCCCCTAAAATTTCAGTTATTCTCC
TTTTTAATTCACGCACATAACTACATGGGCCTGCTCCAGCTCTATGGCAG
TGAAAACCGCACGGTCCTTATTCCAATATTATAACAAATACAGAAGACTA
CGTCGTATAGTTTTCTATTTCCATTTCTACCCCTGAAAAAAATGCTTCAG
GGGCAAAATACAACCTTGTAGTCGGTCCCACTCGGGCAAGTAAATGTGCT
GGTAGCGTCATCCTTAGGGTAACTGTAAACATCCGGGCACCTATCCTTGA
AAAACTTGGAAAAACCTGTAGGTCCGCAGTTGCCTGAATTGCAACAGTAC
TCGTCGGTCTTGAACACGGGGCACGGCCCGTTACATCCTCCAGGAACCTT
CAATTCATTAGGGCACTCCCCAAGAATGTTAGCAGTGCACTTGATCACGC
GGTTGCATGAGGGAGAAACAAAGCTAAATTCCATGGGAACATTGAATCCG
TCAATGTTGGACATGTCAATGAAATCCATGTCATTGAATTGCTTCAACGC
GTACTCGGCCAAGGTGTTAGGTGCTGCACCGTAGCCTTGGCACTCGAGGA
GTCCGTTACAGTCACCGGTCTCGCATTTGCCTTTGCCGGAAGCATCAAAC
TGGCATTTGGTTCGAGCCCAAATGCGGGCTGCTTTTGTGCCTGGCGCGGC
GGTGATGGTCCATGTTTGACCCTTGTCGAGTTGCCTGCCGCCTC
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